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Re: [scipion-users] phase shift data in "analyze results" gui ?
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From: Carlos O. S. <co...@cn...> - 2018-04-14 08:57:40
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Thank you, Gregory, for the clarification. On 14/04/2018 10:46, Gregory Sharov wrote: > Hello, Jonathan > > As Pablo mentioned earlier, phase shift from gctf was incorrectly > parsed in many cases from output files in version 1.1, in 1.2 this > should be fixed now. Carlos is referring to phase shift calculation by > xmipp, which is not available yet. > > On Sat, Apr 14, 2018, 09:18 Carlos Oscar Sorzano <co...@cn... > <mailto:co...@cn...>> wrote: > > Dear Jonathan, > > phase shift was not calculated in v1.1, it has been added in the > development branch, and it will be present in next release. > > Kind regards, Carlos Oscar > > > On 13/04/2018 0:59, Jonathan Remis wrote: >> >> Hello, >> >> I am using SCIPION v1.1 and want to use a streaming data pipeline >> to give me a live readout of phase shifts as I collect images >> using gctf. Unlike most of the other information determined in >> the CTF estimation I don't see any columns for phase shift. I do >> see the values in >> >> //Runs/xxx_ProtGctf/extra/micrograph_name/ctfEstimation.txt / >> / >> / >> Perhaps there is a way to extract this data from the file but the >> format of the file doesn't allow me to grep it, or at least I >> don't know how to do this. >> >> If I am overlooking something or if you know of a way I could >> more easily get this information it would be quite useful. >> >> >> Thanks for your help< >> Jonathan >> >> >> -- >> >> ------------------------------------------------------------------------ >> >> *JONATHAN REMIS* >> >> CryoEM Facilities Manager >> >> >> Northwestern University >> >> Department of Molecular Biosciences >> >> >> mailing address >> >> 2205 Tech Drive >> >> Hogan 2-100 >> >> Evanston, IL 60208-3500 >> >> USA >> >> >> *OFFICE*+1-847-491-7813 >> >> *EMAIL *jon...@no... >> <mailto:jon...@ab...> >> >> >> >> ------------------------------------------------------------------------------ >> Check out the vibrant tech community on one of the world's most >> engaging tech sites, Slashdot.org!http://sdm.link/slashdot >> >> >> _______________________________________________ >> scipion-users mailing list >> sci...@li... >> <mailto:sci...@li...> >> https://lists.sourceforge.net/lists/listinfo/scipion-users > > -- > ------------------------------------------------------------------------ > Carlos Oscar Sánchez Sorzano e-mail:co...@cn... <mailto:co...@cn...> > Biocomputing unithttp://i2pc.es/coss > National Center of Biotechnology (CSIC) > c/Darwin, 3 > Campus Universidad Autónoma (Cantoblanco) Tlf: 34-91-585 4510 > 28049 MADRID (SPAIN) Fax: 34-91-585 4506 > ------------------------------------------------------------------------ > > ------------------------------------------------------------------------------ > Check out the vibrant tech community on one of the world's most > engaging tech sites, Slashdot.org! > http://sdm.link/slashdot_______________________________________________ > scipion-users mailing list > sci...@li... > <mailto:sci...@li...> > https://lists.sourceforge.net/lists/listinfo/scipion-users > > > > ------------------------------------------------------------------------------ > Check out the vibrant tech community on one of the world's most > engaging tech sites, Slashdot.org! http://sdm.link/slashdot > > > _______________________________________________ > scipion-users mailing list > sci...@li... > https://lists.sourceforge.net/lists/listinfo/scipion-users -- ------------------------------------------------------------------------ Carlos Oscar Sánchez Sorzano e-mail: co...@cn... Biocomputing unit http://i2pc.es/coss National Center of Biotechnology (CSIC) c/Darwin, 3 Campus Universidad Autónoma (Cantoblanco) Tlf: 34-91-585 4510 28049 MADRID (SPAIN) Fax: 34-91-585 4506 ------------------------------------------------------------------------ |
