Re: [scipion-users] phase shift data in "analyze results" gui ?

[Gregory S. <sha...@gm...>]

Hello, Jonathan

As Pablo mentioned earlier, phase shift from gctf was incorrectly parsed in
many cases from output files in  version 1.1, in 1.2 this should be fixed
now. Carlos is referring to phase shift calculation by xmipp, which is not
available yet.

On Sat, Apr 14, 2018, 09:18 Carlos Oscar Sorzano <co...@cn...> wrote:

> Dear Jonathan,
>
> phase shift was not calculated in v1.1, it has been added in the
> development branch, and it will be present in next release.
>
> Kind regards, Carlos Oscar
>
> On 13/04/2018 0:59, Jonathan Remis wrote:
>
>
> Hello,
>
> I am using SCIPION v1.1 and want to use a streaming data pipeline to give
> me a live readout of phase shifts  as I collect images using gctf.   Unlike
> most of the other information determined in the CTF estimation I don't see
> any columns for phase shift. I do see the values in
>
>   */Runs/xxx_ProtGctf/extra/micrograph_name/ctfEstimation.txt *
>
> Perhaps there is a way to extract this data from the file but the format
> of the file doesn't allow me to grep it, or at least I don't know how to do
> this.
>
> If I am overlooking something or if you know of a way I could more easily
> get this information it would be quite useful.
>
>
> Thanks for your help<
> Jonathan
>
>
> --
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> ------------------------------
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> *JONATHAN REMIS*
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> Carlos Oscar Sánchez Sorzano                  e-mail:   co...@cn...
> Biocomputing unit                             http://i2pc.es/coss
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