Re: [scipion-users] Creating a project and loading a workflow from the command line

[Pablo C. <pc...@cn...>]

Thanks Jose....additionally you can have a look to this:

https://github.com/I2PC/scipion/wiki/Streaming-Processing#kicking-off-scipion-in-your-pipeline

I've just added today since I had to explain this to a facilitiy manager 
that had the same /similar question

Feel free to ask...this is that first version and it can be more clear., 
may be?.


On 09/03/18 10:40, Jose Miguel de la Rosa Trevin wrote:
> Hi Kyle,
>
> Unfortunately we haven't documented the API that well...this is a 
> pending task.
> Nonetheless you have some developers documentation here:
> https://github.com/I2PC/scipion/wiki/Developers-Page
> I would recommend to take a look at the "How to create a protocol page":
> https://github.com/I2PC/scipion/wiki/Creating-a-Protocol
>
> I will recommend to look at the Python code, specially the following:
> - Object (basic wrapper around Python types that can be 
> stored/retrieved),  pyworkflow/object.py
> - Protocol (basic execution unit:Manager (to deal we projects): 
> pyworkflow/protocol/protocol.py
> - Project (managing a given project) pyworkflow/project.py
> - Manager: pyworkflow/manager.py
>
> Feel free to provide any feedback,
> Best,
> Jose Miguel
>
>
> On Fri, Mar 9, 2018 at 11:15 AM, Kyle Douglass <kyl...@ep... 
> <mailto:kyl...@ep...>> wrote:
>
>     Hi Jose Miguel,
>
>
>     On 03/09/2018 09:23 AM, Jose Miguel de la Rosa Trevin wrote:
>
>>     You can easily do what you want in a Python script via our API.
>>     Basically you will need to create a new project and then load the
>>     given .json file. Take a look at the following example here:
>>
>>     https://github.com/delarosatrevin/scipion-session/blob/f2ac1934f24ebcf0c3da205e9878eca86e4d80a4/aarhus/new-session-aarhus.py#L60
>>     <https://github.com/delarosatrevin/scipion-session/blob/f2ac1934f24ebcf0c3da205e9878eca86e4d80a4/aarhus/new-session-aarhus.py#L60>
>>
>
>     Thanks for the swift response! Indeed, I think that this is the
>     solution I am looking for.
>
>     Is the Python API documented anywhere, or should I focus on
>     extracting the main functions by looking at the Python code itself?
>
>     Thanks again,
>
>     Kyle
>
>     -- 
>     Kyle M. Douglass, PhD
>     Post-doctoral researcher
>     The Laboratory of Experimental Biophysics
>     EPFL, Lausanne, Switzerland
>     http://kmdouglass.github.io
>     http://leb.epfl.ch
>
>
>
>
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