Re: [scipion-users] Creating a project and loading a workflow from the command line

[Jose M. de la R. T. <del...@gm...>]

Hi Kyle,

You can easily do what you want in a Python script via our API.
Basically you will need to create a new project and then load the
given .json file. Take a look at the following example here:

https://github.com/delarosatrevin/scipion-session/blob/f2ac1934f24ebcf0c3da205e9878eca86e4d80a4/aarhus/new-session-aarhus.py#L60



I also wrote a simple script to edit .json files in the GUI (basically
faking a project in a temporary folder and then saving the .json
back when closing the windows.) that maybe could also be useful for you.
It is in the branch *release-1.1.facilities-devel *that will be the next
stable release 1.2. Following the link:

https://github.com/I2PC/scipion/blob/release-1.1.facilities-devel/scripts/edit_workflow.py

Hope this helps
Best
Jose Miguel


On Fri, Mar 9, 2018 at 8:12 AM, Kyle Michael Douglass <kyl...@ep...
> wrote:

> Hi all,
>
>
> First-time Scipion user here (version 1.1). How would I create a new
> project and import a workflow from a .json file from the command line?
>
>
> I ask because my collaborators are using Scipion as part of a larger data
> analysis pipeline that extends beyond EM. At one point in this pipeline we
> want to automatically launch the Scipion GUI with a new project and import
> a workflow that has already been specified in a .json file. I know how to
> do this manually with the GUI, but it would be nice to have the new project
> and workflow setup via a script so we can easily vary some of the analysis
> parameters.
>
>
> Thanks a lot for the help. I would be happy to provide any additional
> information if necessary.
>
>
> Cheers,
>
> Kyle
>
>
> Dr. Kyle M. Douglass
> Post-doctoral Researcher
> EPFL - The Laboratory of Experimental Biophysics
> http://leb.epfl.ch/
> http://kmdouglass.github.io
>
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