Re: [scipion-users] scipion install issue-name 'xmipp' is not defined

[Jose M. de la R. T. <del...@gm...>]

Dear Miao,

You don't need to define neither SCIPION_HOME or SCIPION_USER_DATA. The
first one is inferred from
the location of the scipion script and the second is defined in the
configuration file.

Try to remove those and execute Scipion again. I'm not sure if the 'xmipp'
issue is related to that or not.
Are you using the binary installation or from source code? That error seems
to me like xmipp libraries
(now required by Scipion) are not properly installed.

Best,
Jose Miguel


On Mon, Jan 29, 2018 at 3:52 AM, Miao Gui <gmh...@16...> wrote:

> Dear scipion developers,
>
> I am a new user of scipion. I have configured and installed the scipion on
> my workstation, everything looks fine. And I added the following lines in
> my ~/.cshrc
>
> *setenv SCIPION_HOME "/usr/local/scipion-master"*
> *setenv SCIPION_USER_DATA "/usr/local/scipion-master/data"*
> *alias setxmipp source /usr/local/scipion/software/em/xmipp/xmipp.csh*
>
> But when I run scipion under the /usr/local/scipion-master/ folder, it
> comes to an error  and the message is listed below. How could I solve this
> problem?
>
> *Scipion v1.1 (2017-06-14) Balbino*
>
> *>>>>> python  /usr/local/scipion-master/pyworkflow/apps/pw_manager.py *
> *Traceback (most recent call last):*
> *  File "/usr/local/scipion-master/pyworkflow/apps/pw_manager.py", line
> 32, in <module>*
> *    from pyworkflow.gui.project import ProjectManagerWindow*
> *  File "/usr/local/scipion-master/pyworkflow/gui/project/__init__.py",
> line 27, in <module>*
> *    from project import ProjectManagerWindow, ProjectWindow*
> *  File "/usr/local/scipion-master/pyworkflow/gui/project/project.py",
> line 45, in <module>*
> *    from pyworkflow.manager import Manager*
> *  File "/usr/local/scipion-master/pyworkflow/manager.py", line 33, in
> <module>*
> *    from project import Project*
> *  File "/usr/local/scipion-master/pyworkflow/project.py", line 40, in
> <module>*
> *    import pyworkflow.em as em*
> *  File "/usr/local/scipion-master/pyworkflow/em/__init__.py", line 35, in
> <module>*
> *    from data import **
> *  File "/usr/local/scipion-master/pyworkflow/em/data.py", line 39, in
> <module>*
> *    from convert import ImageHandler*
> *  File "/usr/local/scipion-master/pyworkflow/em/convert.py", line 39, in
> <module>*
> *    class ImageHandler(object):*
> *  File "/usr/local/scipion-master/pyworkflow/em/convert.py", line 42, in
> ImageHandler*
> *    DT_DEFAULT = xmipp.DT_DEFAULT*
> *NameError: name 'xmipp' is not defined*
>
> Best wishes,
> Miao Gui
>
>
>
>
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