Re: [scipion-users] customizing hosts.conf to put .out and .err in the logs directory of each run

[Gregory S. <sha...@gm...>]

Hi Daniel,

I believe you can achieve this by using "#SBATCH -o %_(JOB_SCRIPT)s.out -e
%_(JOB_SCRIPT)s.err"



Best regards,
Grigory

--------------------------------------------------------------------------------
Grigory Sharov, Ph.D.

MRC Laboratory of Molecular Biology,
Francis Crick Avenue,
Cambridge Biomedical Campus,
Cambridge CB2 0QH, UK.
tel. +44 (0) 1223 267542 <+44%201223%20267542>
e-mail: gs...@mr...

On Fri, Jan 12, 2018 at 8:39 AM, Daniel Larsson <dan...@ic...>
wrote:

> Hi,
>
> I'm trying to customize my hosts.conf file for a SLURM batch system.
> Currently, the .out and the .err files end up in the root of my project
> directory e.g. "~/ScipionUserData/projects/my_project/job7113248.out". I
> have the SLURM variables set by: "#SBATCH -o job%%j.out -e job%%j.err".
>
> Instead I'd prefer if the .out and .err could go into the 'logs' directory
> for the specific run together with the rest of the log files. E.g
> "~/ScipionUserData/projects/my_project/Runs/000367_
> ProtRelionRefine3D/logs/job7113248.out".
>
> Is there a way to achieve that?
>
> Regards,
> Daniel
>
>
> ------------------------------------------------------------
> ------------------
> Check out the vibrant tech community on one of the world's most
> engaging tech sites, Slashdot.org! http://sdm.link/slashdot
> _______________________________________________
> scipion-users mailing list
> sci...@li...
> https://lists.sourceforge.net/lists/listinfo/scipion-users
>