[scipion-users] customizing hosts.conf to put .out and .err in the logs directory of each run

[Daniel L. <dan...@ic...>]

Hi,

I'm trying to customize my hosts.conf file for a SLURM batch system. Currently, the .out and the .err files end up in the root of my project directory e.g. "~/ScipionUserData/projects/my_project/job7113248.out". I have the SLURM variables set by: "#SBATCH -o job%%j.out -e job%%j.err".

Instead I'd prefer if the .out and .err could go into the 'logs' directory for the specific run together with the rest of the log files. E.g "~/ScipionUserData/projects/my_project/Runs/000367_ProtRelionRefine3D/logs/job7113248.out".

Is there a way to achieve that?

Regards,
Daniel