[scipion-users] problem using queuing system

[Gary S. <gar...@vr...>]

I'm trying to get Scipion-1.1 running with our Univa Grid Engine setup (aka. SGE).  Scipion appears to be failing to use the launch protocol remotely, even though this works fine outside of Scipion.  Has anyone seen errors like this?

Error during EXECUTE: ** Couldn't parse ouput: [31m
Scipion v1.1 (2017-06-14) Balbino

[0m

Traceback:
Traceback (most recent call last):
  File "/cluster/app/scipion/1.1/pyworkflow/gui/form.py", line 1710, in _close
    message = self.callback(self.protocol, onlySave)
  File "/cluster/app/scipion/1.1/pyworkflow/gui/project/viewprotocols.py", line 1662, in _executeSaveProtocol
    self.project.launchProtocol(prot)
  File "/cluster/app/scipion/1.1/pyworkflow/project.py", line 417, in launchProtocol
    pwprot.launch(protocol, wait)
  File "/cluster/app/scipion/1.1/pyworkflow/protocol/launch.py", line 64, in launch
    jobId = _launchRemote(protocol, wait)
  File "/cluster/app/scipion/1.1/pyworkflow/protocol/launch.py", line 164, in _launchRemote
    raise Exception("** Couldn't parse ouput: %s" % redStr(out))
Exception: ** Couldn't parse ouput: [31m
Scipion v1.1 (2017-06-14) Balbino

[0m



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