Re: [scipion-users] Don't see CTF object in Xmipp extractor

[David B. <db...@co...>]

Jose Miguel,

I don’t get another SetOfMicrographs from the ‘ctf - assign’ protocol I ran.  See attached picture.  (The name for the green box underneath the ‘Protocol Run’ window is ‘import micrographs dose weighted’.)

David


On Aug 9, 2017, at 2:14 PM, Jose Miguel de la Rosa Trevin <del...@gm...<mailto:del...@gm...>> wrote:

Hi David,

I think that after the 'ctf - assign' protocol both SetOfCTF and SetOfMicrographs are created. The resulting micrographs are the one that have been "linked" to CTF info. Have you used those one in the protocol 'xmipp - particle extraction' ? (you  can select Micrographs source "Other" and provide those ones).

Hope this helps,
Jose Miguel


On Wed, Aug 9, 2017 at 9:19 PM, David Belnap <db...@co...<mailto:db...@co...>> wrote:
I have a new data set made up of dose-weighted and non-dose-weighted micrographs.  I did CTF estimation from the non-dose-weighted group and selected the best micrographs from that set and then used CTF assign to assign CTFs to the dose-weighted group.  After selecting particles, I am ready to extract them.  But, when I use “xmipp3 extract particles”, I don’t see any CTF object in the selection window.  I do see the particle coordinates in that selection window.  I’ve attached images.

Thanks.

David




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