Re: [scipion-users] Don't see CTF object in Xmipp extractor

[Jose M. de la R. T. <del...@gm...>]

Ok, I'm sorry, I think I confused this protocol with another one. I will
try to reproduce you same workflow to verify what is happening.

On Wed, Aug 9, 2017 at 10:53 PM, David Belnap <db...@co...>
wrote:

> Jose Miguel,
>
> I don’t get another SetOfMicrographs from the ‘ctf - assign’ protocol I
> ran.  See attached picture.  (The name for the green box underneath the
> ‘Protocol Run’ window is ‘import micrographs dose weighted’.)
>
> David
>
>
> On Aug 9, 2017, at 2:14 PM, Jose Miguel de la Rosa Trevin <
> del...@gm...> wrote:
>
> Hi David,
>
> I think that after the 'ctf - assign' protocol both SetOfCTF and
> SetOfMicrographs are created. The resulting micrographs are the one that
> have been "linked" to CTF info. Have you used those one in the protocol
> 'xmipp - particle extraction' ? (you  can select Micrographs source "Other"
> and provide those ones).
>
> Hope this helps,
> Jose Miguel
>
>
> On Wed, Aug 9, 2017 at 9:19 PM, David Belnap <db...@co...>
> wrote:
>
>> I have a new data set made up of dose-weighted and non-dose-weighted
>> micrographs.  I did CTF estimation from the non-dose-weighted group and
>> selected the best micrographs from that set and then used CTF assign to
>> assign CTFs to the dose-weighted group.  After selecting particles, I am
>> ready to extract them.  But, when I use “xmipp3 extract particles”, I don’t
>> see any CTF object in the selection window.  I do see the particle
>> coordinates in that selection window.  I’ve attached images.
>>
>> Thanks.
>>
>> David
>>
>>
>>
>>
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>