Re: [scipion-users] Don't see CTF object in Xmipp extractor

[Jose M. de la R. T. <del...@gm...>]

Hi David,

I think that after the 'ctf - assign' protocol both SetOfCTF and
SetOfMicrographs are created. The resulting micrographs are the one that
have been "linked" to CTF info. Have you used those one in the protocol
'xmipp - particle extraction' ? (you  can select Micrographs source "Other"
and provide those ones).

Hope this helps,
Jose Miguel


On Wed, Aug 9, 2017 at 9:19 PM, David Belnap <db...@co...> wrote:

> I have a new data set made up of dose-weighted and non-dose-weighted
> micrographs.  I did CTF estimation from the non-dose-weighted group and
> selected the best micrographs from that set and then used CTF assign to
> assign CTFs to the dose-weighted group.  After selecting particles, I am
> ready to extract them.  But, when I use “xmipp3 extract particles”, I don’t
> see any CTF object in the selection window.  I do see the particle
> coordinates in that selection window.  I’ve attached images.
>
> Thanks.
>
> David
>
>
>
>
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