[scipion-users] xmipp_transform_window

[Dieter B. <die...@me...>]

Dear colleagues,

     I am trying to window a stack of particle images and a 
corresponding volume from 450 x 450 x 450 px to 200 x 200 x 200 but 
shifted on z by 100 px up. Are the following commands correct?

1) for the stack of particle images:

xmipp_transform_window -i subtracted.mrcs --corners -100 -100 -0 99 -o 
subtracted_200_new.mrcs"

2) for the volume:

"xmipp_transform_window -i run_class001.mrc:mrc --corners -100 -100 -0 
99 99 199 -o run_class001.mrc:mrc"

I am somewhat intrigued by the message issued on running on the stack of 
particle images:

"Output File: subtracted_200_new.mrcs
New window: from (z0,y0,x0)=(0,-100,-100) to (zF,yF,xF)=(0,99,0)"

what does it do with the z-axis here?

thanks, best regards, Dieter


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Dieter Blaas,
Max F. Perutz Laboratories
Medical University of Vienna,
Inst. Med. Biochem., Vienna Biocenter (VBC),
Dr. Bohr Gasse 9/3,
A-1030 Vienna, Austria,
Tel: 0043 1 4277 61630,
Fax: 0043 1 4277 9616,
e-mail: die...@me...
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