Re: [scipion-users] movie alignments

[Carlos O. S. <co...@cn...>]

On 04/29/17 11:35, Dmitry Semchonok wrote:
> Dear colleagues,
>
>
>
> 2. xmipp3 - correlation alignment / optical alignment
>
>
>
>
> 2.1 correlation alignment
>
> - from time to time the protocol stops. When I resubmit it continues 
> working.
> But the question is why does that happen: problem with my dataset 
> and/or bug?
>
Without a specific error, it is hard to say.
>
> 2.2 optical alignment
>
> - if you may remember the problem was that it finished because of an 
> error in 1 file.
>
> Is there already the solution for skipping the movies that causing the 
> error?
>
Yes, we have on our roof to make the protocol more robust to incorrect 
movies.
> Alternatively, I removed that file (it looked fine in terms of frames 
> and visibility - I can send it for the analysis) and have to rerun the 
> xmipp3-correlation again. But there is no guarantee that the program 
> will not stop on some other file.
>
Kind regards, Carlos Oscar

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Carlos Oscar Sánchez Sorzano                  e-mail:   co...@cn...
Biocomputing unit                             http://biocomp.cnb.csic.es
National Center of Biotechnology (CSIC)
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Campus Universidad Autónoma (Cantoblanco)     Tlf: 34-91-585 4510
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