Re: [scipion-users] Xmipp picking

[Grigory S. <sha...@gm...>]

Hi,

Eman 1 box format saves bottom left corner of the box and box size, while
Eman2 saves center of the boxes in json format

On Apr 24, 2017 22:03, "Juha Huiskonen" <ju...@st...> wrote:

> Hi Dennis,
>
> I believe xmipp is the center coordinate and EMAN is lower left followed
> by the box size
>
> Best wishes,
> Juha
>
> --
> Juha T. Huiskonen, PhD
> Associate Professor
>
> Principal Investigator
> Joint Head of Oxford Particle Imaging Centre
> Division of Structural Biology
> University of Oxford
>
> On 24 Apr 2017, at 15:35, Dennis Thomas <dt...@pr...>
> wrote:
>
> Hi I very much like the xmipp particle picking in Scipion but wanted to
> extract the particles in EMAN. The *.pos file is not read by EMAN so I
> wrote a script to convert the file to an EMAN .box format. However the
> particles extracted are wrong meaning nothing centered. Does xmipp save the
> center, top left or are the micrograph coordinates defined differently from
> EMAN?
>
> Thanks,
>
> Dennis
>
>
> --
> Dr. Dennis Thomas
> Cryo-EM Facility Manager
> Center for Integrative Proteomics Research
> Rutgers University
> Phone: 848-445-5302
>
> <dthomas.vcf>
>
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