Re: [scipion-users] xmipp3 - correlation alignment - error

[Grigory S. <sha...@gm...>]

Hi Dmitry,

I can't seem to reproduce your error. If you update to the latest changes
in release-1.1 branch, does this persists? Are you running this protocol
with threads or mpi?

Best regards,
Grigory

--------------------------------------------------------------------------------
Grigory Sharov, Ph.D.

MRC Laboratory of Molecular Biology,
Francis Crick Avenue,
Cambridge Biomedical Campus,
Cambridge CB2 0QH, UK.
tel. +44 (0) 1223 267542 <+44%201223%20267542>
e-mail: gs...@mr...

On Wed, Apr 5, 2017 at 3:08 PM, Dmitry Semchonok <sem...@gm...>
wrote:

> Dear colleagues,
>
> I'm trying to understand why my *xmipp3 - movie alignment *had a mistake.
>
> So I decided to redo the previous step  - *xmipp3 - correlation alignment*
> .
>
> And I got the error
>
>
> [image: Встроенное изображение 1]
>
>
> Protocol failed: (66.171875, 0.5, 'Drift y (pixels)', 'k', 'bottom',
> 'center', 6986592459084550303, 'vertical', 'anchor', 100, 139695248682160)
> 00256:   2017-04-05 15:29:04,500 INFO:  FAILED: processMovieStep, step 46
> 00257:   2017-04-05 15:29:04,501 INFO:    2017-04-05 15:28:57.434487
> 00258:   2017-04-05 15:29:04,575 INFO:  ------------------- PROTOCOL
> FAILED (DONE 4/5141)
> 00259:   2017-04-05 15:32:42,559 INFO:  Erasing.....movieFolder:
> Runs/020869_XmippProtMovieCorr/tmp/movie_000048
> 00260:   2017-04-05 15:32:57,502 INFO:  Erasing.....movieFolder:
> Runs/020869_XmippProtMovieCorr/tmp/movie_000049
> 00261:   2017-04-05 15:32:57,658 INFO:  ------------------- PROTOCOL
> FAILED (DONE 4/5141)
>
>
>
> Could you explain/propose what went wrong with *xmipp3 - correlation
> alignment*?
>
> (the SCIPION was updated through git several times so may be that is the
> reason)
>
> Thank you
>
> Sincerely,
> Dmitry
>
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