Re: [scipion-users] installation of the Scipion: OS selection

[Jose M. de la R. T. <del...@gm...>]

Wolfgang, thanks a lot for your feedback!!!

On Mon, Mar 20, 2017 at 1:10 PM, Wolfgang Lugmayr <w.l...@uk...> wrote:

> hi,
>
> i just compiled and installed it for small tests, since my laptop is too
> weak to run huge analysis.
>
> you need the openjdk-7-jdk package instead of 8. the rest runs as on the
> install page without any further problems.
> this is not a full ubuntu, since it lacks the linux kernel. its a
> bash/ubuntu subsystem.
> so you cannot use the gpu, because you cannot load the nvidia kernel
> module.
> but most packages work there anyway and you can use the normal ubuntu
> repository.
> cryosparc is not working due the lack of gpu support in the subsystem.
>
> you cannot start a whole gnome/kde session (they need dbus which does not
> exist), but you can start individual gnome/kde programs with the external
> x-server on windows.
>
> but if you use e.g. chimerax on windows directly (gpu support) and
> calculate on the ubuntu subsystem with linux programs, its fine to use. the
> ubuntu subsystem can access all local files from windows 10 (/mnt/c etc.).
> from windows you can call most ubuntu programs via bash.exe -c scriptname.
>
> nfs mounts of remote fileservers is not supported, so you would need your
> data on a usb3 drive (e.g. /mnt/d).
>
> cheers,
> wolfgang
>
>
>
> Am 20.03.2017 um 11:12 schrieb Jose Miguel de la Rosa Trevin:
>
> Thanks Wolfgang...Have you used Scipion in Windows 10 through the Ubuntu
> bash console? If so I would be interested in hear about your experience.
>
> Dmitry, we haven't tried it ourselves...you always have the option to
> install a virtual machine through VirtualBox.
>
> Cheers,
> Jose Miguel.
>
>
> On Mon, Mar 20, 2017 at 11:05 AM, Wolfgang Lugmayr <w.l...@uk...>
> wrote:
>
>> hi dimitry,
>>
>> to run the scipion gui on bash on windows on ubuntu you need an x-server
>> to  display the gui (same for the relion gui):
>> https://sourceforge.net/projects/vcxsrv/
>>
>> cheers,
>> wolfgang
>>
>>
>>
>> On 03/20/2017 10:16 AM, Dmitry Semchonok wrote:
>>
>> Dear colleagues,
>>
>> It seems that the time has come for me to try installation of the Scipion
>> myself on the home machine. Initially I have Windows 10 on it.
>>
>> What linux operation system could you recommend? As I understand Windows
>> is not yet supported?
>>
>> Yesterday I tried to install bash Ubuntu on windows 10 but I'm not sure
>> if the futher installation of the Scipion will go smoothly.
>>
>>
>> Sincerely,
>> Dmitry
>>
>>
>>
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> Universitätsklinikum Hamburg-Eppendorf; Körperschaft des öffentlichen
> Rechts; Gerichtsstand: Hamburg | www.uke.de
> Vorstandsmitglieder: Prof. Dr. Burkhard Göke (Vorsitzender), Prof. Dr. Dr.
> Uwe Koch-Gromus, Joachim Prölß, Rainer Schoppik
> ------------------------------
>
> SAVE PAPER - THINK BEFORE PRINTING
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