Re: [scipion-users] helical processing in Scipion

[Jose M. de la R. T. <del...@gm...>]

Hi Juha,

As Pablo said, Relion 2.0 helical processing will not be supported for the
upcoming release, and there are other stuff pending in the roadmap. But I
guess that many other people will find helpful to have that workflow inside
Scipion, specially if requires to combine more than one package (EMAN2 and
Relion in this case).

I have not much experience (almost none) with helical processing, but it
seems that you have a very clear workflow and idea about how it can be
implemented in Scipion. I think that I could dedicate some time to get it
done, but only if we manage to do it together. In this case will not take
much time from both sides. If you are interested we can further discuss a
concrete plan to go ahead.

Kind regards,
Jose Miguel


On Wed, Mar 8, 2017 at 5:25 PM, Pablo Conesa <su...@bc...>
wrote:

> Dear Juha
>
> Supporting helix processing is part of our roadmap among tomography.
>
> To be honest we don't see it happen in the "near future" (less than 6
> months).
>
>
> All the best, Pablo.
> Scipion team
>
> Activo Mar, 7 Marzo at 7:34 PM , Juha Huiskonen <ju...@st...>
> Escrito:
> Hello Developers,
>
> I currently pick filaments with helical symmetry using helixboxer of EMAN2
> and save BOX files. Currently I process everything in Relion 2.0 using, but
> would be nice to do everything from Scipion. Once Relion 2.0 becomes
> available I guess we are one step closer. But I have a couple of questions
> what your plans are:
>
> - will Scipion support helical processing through Relion?
> - can filament coordinates be exported from BOX files?
> - could e2helixboxer GUI be supported? in addition to e2boxer?
> - will the in-plane angle retained from the filament end-points?
>
> Best wishes,
> Juha
>
> 61
>
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