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Re: [scipion-users] Can't import star file into scipion
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From: Pablo C. <pc...@cn...> - 2017-01-17 09:42:53
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Dear Meng, Are you by any chance, importing relion 2.0 star files. You are using Scipion v1.0 (released last February) and Relion 2.0 files are not compatible. We have tested Relion 2.0 beta and is working fine so far, but haven't released the code yet. If that is the case: A:) Scipion v1.0 can't use Relion 2.0, and we haven't explore any workaround. So no solution at all for this case B:) Checkout our devel branch, which currently supports Relion 2.0 files. BUt be aware that this is a development branch, and although we try hard to keep it stable, it hasn't gone through the extensive tests and quality checks that any Scipion release will. C:) Wait, if it's an option, until we release our new version v1.1, that is planned for February, but might be delayed until March depending on our release tests process success. Does this help? Cheers, Pablo. Scipion team. On 17/01/17 08:33, Pablo Conesa wrote: > > Dear Meng, > > > I could access your images now, thanks. > > > I guess you are getting this when clicking on a certain file in the > "Browser" window: > > > > > Am I right? > > > If so, it seems the browser is trying to get a preview image and for > some reason it can't deal with it. > > > Would it be possible, to share/send the file you are clicking in and, > if it's a star file that points to a mrcs or other binary file, the > binary file too? > > > Be aware that you are using a public email list, if you want don't > want to share sensible information/data, just reply to me > pc...@cn.... > > > Thanks for reporting, Pablo. > > > Scipion team. > > > On 16/01/17 19:45, Meng Yang, Dr wrote: >> Meng Yang, Dr has shared OneDrive for Business files with you. To >> view them, click the links below. >> >> <https://mcgill-my.sharepoint.com/personal/meng_yang_mail_mcgill_ca/Documents/Email%20attachments/problem%281%29.png> >> >> problem(1).png >> <https://mcgill-my.sharepoint.com/personal/meng_yang_mail_mcgill_ca/Documents/Email%20attachments/problem%281%29.png> >> [problem(1).png] >> >> <https://mcgill-my.sharepoint.com/personal/meng_yang_mail_mcgill_ca/Documents/Email%20attachments/terminal_infor.png> >> >> terminal_infor.png >> <https://mcgill-my.sharepoint.com/personal/meng_yang_mail_mcgill_ca/Documents/Email%20attachments/terminal_infor.png> >> [terminal_infor.png] >> >> Dear Josue, >> >> Thank you very much for your reply. >> >> Here I attached the screenshot of both the GUi and the terminal. >> >> Please let me know whether you can see them. >> >> >> Thanks again! >> >> ------------------------------------------------------------------------ >> *From:* Josue Gomez Blanco <jos...@gm...> >> *Sent:* January 16, 2017 6:37:59 AM >> *To:* Meng Yang, Dr >> *Cc:* sci...@li... >> *Subject:* Re: [scipion-users] Can't import star file into scipion >> Dear Yang: >> I cant see the picture that you sent. Can you attach a screenshot of >> the error and also the parameters? Thank you in advance. >> Josue >> >> 2017-01-16 16:07 GMT+01:00 Meng Yang, Dr <men...@ma... >> <mailto:men...@ma...>>: >> >> Meng Yang, Dr has shared a OneDrive for Business file with you. >> To view it, click the link below. >> >> <https://mcgill-my.sharepoint.com/personal/meng_yang_mail_mcgill_ca/Documents/Email%20attachments/problem.png> >> >> problem.png >> <https://mcgill-my.sharepoint.com/personal/meng_yang_mail_mcgill_ca/Documents/Email%20attachments/problem.png> >> [problem.png] >> >> Dear all, >> >> I have a problem about particle import into scipion, as am trying >> to import a star file but I keep getting the error message :do >> not know how to handle this type. >> I have checked the star file and everything and there is no >> problem with it. The third column in the star file >> (label: _rlnImageName) points to the actual place where the .mrcs >> are. >> >> >> Can somebody help me with this? Thank you very much! >> >> >> ------------------------------------------------------------------------------ >> Check out the vibrant tech community on one of the world's most >> engaging tech sites, SlashDot.org! >> <http://sdm.link/slashdot>http://sdm.link/slashdot >> _______________________________________________ >> scipion-users mailing list >> sci...@li... >> <mailto:sci...@li...> >> https://lists.sourceforge.net/lists/listinfo/scipion-users >> <https://lists.sourceforge.net/lists/listinfo/scipion-users> >> >> >> >> >> ------------------------------------------------------------------------------ >> Check out the vibrant tech community on one of the world's most >> engaging tech sites, SlashDot.org!http://sdm.link/slashdot >> >> >> _______________________________________________ >> scipion-users mailing list >> sci...@li... >> https://lists.sourceforge.net/lists/listinfo/scipion-users > |
