Re: [scipion-users] SCIPION-->Relion: Subset files: no *.star

[Pablo C. <pc...@cn...>]

Dear Dmitry, here you have 3 options.

A:) Use Relion withing Scipion and Scipion will manage the conversion 
for you.

If you want to use Relion 2.0 Beta, we already tested this in our devel 
branch, and, although it's pretty stable and we already process and have 
betatesters using it, it's a development branch with all that it implies 
in terms of stability.

B:) Start a the Relion protocol within Scipion, and then stop it once 
conversion step has finished, you should have the relion star files in 
the extra folder.

C:) All data is in the databases and files so you can create the star 
files yourself, but i rather do A or B.

All the best, Pablo.



On 16/01/17 11:18, Dmitry Semchonok wrote:
> Dear colleagues,
>
> _*Subset files: no *.star*_
>
> I have a subset of images obtained after 2D - relion (using SCIPION)
>
> Inside the folder  ProtUserSubSet there are such file as:
> *
> *
> *particles sqlite
> subset sqlite*
>
> and the 3 folders:
>
> *extra
> *
> *log
> *
> *temp
>
> *
> I would like to know how can I continue using relion self-standing 
> soft  - which file can I use as an input for 3D for example (if *star 
> is absent)? *
>
> *
> Is it possible to fetch *.star from sqlite file?*
>
> *
> Sincerely,
> Dmitry*
> *
> *
> *
> *
> *
> *
>
> *
>
>
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