Re: [scipion-users] errors running xmipp3 - ctf_correct_wiener2d & xmipp3 - reconstruct significant

[Carlos O. S. <co...@cn...>]

Dear Dmitry,

as Grigori says, only with these errors it is hard to say what is going 
on, is there any other error message?

Kind regards, Carlos Oscar


On 11/07/16 13:22, Dmitry Semchonok wrote:
> Dear colleagues,
>
> I have a problem with running
>
> xmipp3 - ctf_correct_wiener2d 
> <https://github.com/I2PC/scipion/wiki/XmippProtCTFCorrectWiener2D>:
>
> xmipp3 - reconstruct significant 
> <https://github.com/I2PC/scipion/wiki/XmippProtReconstructSignificant>:
>
>
> I faced the following errors:
>
> xmipp3 - ctf_correct_wiener2d 
> <https://github.com/I2PC/scipion/wiki/XmippProtCTFCorrectWiener2D>:
> Protocol failed: Command 'srun  `which 
> xmipp_mpi_ctf_correct_wiener2d`   -i 
> Runs/001129_XmippProtCTFCorrectWiener2D/input_particles.xmd -o 
> Runs/001129_XmippProtCTFCorrectWiener2D/corrected_ctf_particles.stk 
> --save_metadata_stack 
> Runs/001129_XmippProtCTFCorrectWiener2D/corrected_ctf_particles.xmd 
> --pad 2  --wc -1.0  --sampling_rate 2.24' returned non-zero exit 
> status 127
>
>
> xmipp3 - reconstruct significant 
> <https://github.com/I2PC/scipion/wiki/XmippProtReconstructSignificant>
> Protocol failed: Command 'srun  `which 
> xmipp_mpi_reconstruct_significant` -i 
> Runs/001892_XmippProtReconstructSignificant/extra/input_classes.xmd 
> --sym c1 --angularSampling 5.000000 --minTilt 0.000000 --maxTilt 
> 90.000000 --maxShift -1.000000 --dontReconstruct --angDistance 
> 10.000000 --useImed --odir 
> Runs/001892_XmippProtReconstructSignificant/tmp/iter001 --alpha0 
> 0.200000 --alphaF 0.200000 --numberOfVolumes 1' returned non-zero exit 
> status 127
>
>
>
>
> Any suggestions?
>
> Thank you.
>
> Sincerely,
> Dmitry
>
>
>
> ------------------------------------------------------------------------------
> Developer Access Program for Intel Xeon Phi Processors
> Access to Intel Xeon Phi processor-based developer platforms.
> With one year of Intel Parallel Studio XE.
> Training and support from Colfax.
> Order your platform today. http://sdm.link/xeonphi
>
>
> _______________________________________________
> scipion-users mailing list
> sci...@li...
> https://lists.sourceforge.net/lists/listinfo/scipion-users

-- 
------------------------------------------------------------------------
Carlos Oscar Sánchez Sorzano                  e-mail:   co...@cn...
Biocomputing unit                             http://biocomp.cnb.csic.es
National Center of Biotechnology (CSIC)
c/Darwin, 3
Campus Universidad Autónoma (Cantoblanco)     Tlf: 34-91-585 4510
28049 MADRID (SPAIN)                          Fax: 34-91-585 4506
------------------------------------------------------------------------