Re: [scipion-users] errors running xmipp3 - ctf_correct_wiener2d & xmipp3 - reconstruct significant

[Grigory S. <sha...@gm...>]

Hello Dmitry,

this is not enough to see the source of error. Could you attach log files
(run.stdout) in both cases?

Best regards,
Grigory

--------------------------------------------------------------------------------
Grigory Sharov, Ph.D.
Institute of Genetics and Molecular and Cellular Biology
Integrated Structural Biology Department (CBI)
1, rue Laurent Fries
67404 Illkirch, France
tel. 03 69 48 51 00
e-mail: sh...@ig...

On Mon, Nov 7, 2016 at 1:22 PM, Dmitry Semchonok <sem...@gm...>
wrote:

> Dear colleagues,
>
> I have a problem with running
>
> xmipp3 - ctf_correct_wiener2d
> <https://github.com/I2PC/scipion/wiki/XmippProtCTFCorrectWiener2D>:
>
> xmipp3 - reconstruct significant
> <https://github.com/I2PC/scipion/wiki/XmippProtReconstructSignificant>:
>
>
> I faced the following errors:
>
> xmipp3 - ctf_correct_wiener2d
> <https://github.com/I2PC/scipion/wiki/XmippProtCTFCorrectWiener2D>:
> Protocol failed: Command 'srun  `which xmipp_mpi_ctf_correct_wiener2d`
> -i Runs/001129_XmippProtCTFCorrectWiener2D/input_particles.xmd  -o
> Runs/001129_XmippProtCTFCorrectWiener2D/corrected_ctf_particles.stk
> --save_metadata_stack Runs/001129_XmippProtCTFCorrec
> tWiener2D/corrected_ctf_particles.xmd  --pad 2  --wc -1.0
> --sampling_rate 2.24' returned non-zero exit status 127
>
>
> xmipp3 - reconstruct significant
> <https://github.com/I2PC/scipion/wiki/XmippProtReconstructSignificant>
> Protocol failed: Command 'srun  `which xmipp_mpi_reconstruct_significant`
> -i Runs/001892_XmippProtReconstructSignificant/extra/input_classes.xmd
> --sym c1 --angularSampling 5.000000 --minTilt 0.000000 --maxTilt 90.000000
> --maxShift -1.000000 --dontReconstruct --angDistance 10.000000 --useImed
> --odir Runs/001892_XmippProtReconstructSignificant/tmp/iter001 --alpha0
> 0.200000 --alphaF 0.200000 --numberOfVolumes 1' returned non-zero exit
> status 127
>
>
>
>
> Any suggestions?
>
> Thank you.
>
> Sincerely,
> Dmitry
>
>
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