Re: [scipion-users] RCT in the initial vol tutorial

[Grigory S. <sha...@gm...>]

Hi,

the thing is that protocol runs with mpi=2 and 1 thread (by default in the
protocol, thread number is not taken from GUI) and prints all output to
console and not to run.stdout.

Elad, in principle it should still run (however slowly), you could check
the output in the console where you launched scipion (if it was done
interactively) or the output log file from the job submission system on
your cluster (if you run it on cluster).

Best regards,
Grigory

--------------------------------------------------------------------------------
Grigory Sharov, Ph.D.
Institute of Genetics and Molecular and Cellular Biology
Integrated Structural Biology Department (CBI)
1, rue Laurent Fries
67404 Illkirch, France
tel. 03 69 48 51 00
e-mail: sh...@ig...

On Tue, Nov 1, 2016 at 9:12 PM, Carlos Oscar Sorzano <co...@cn...>
wrote:

> Dear Elad,
>
> can you send the log so that we can better see what may be happening? If
> you attach a screenshot of the project, we may try to figure out the
> workflow you have followed.
>
> Kind regards, Carlos Oscar
>
> On 11/01/16 17:05, Elad Binshtein wrote:
>
> Hi,
> I'm try to go through the  initial vol tutorial and in the lass step EMAN
> and ransac is work good I can not run the xmipp RCT protocol (no error on
> the run log just stuck on step 1/8)
> any suggestion?
>
> Thanks
>
> --
> ________________________________
> Elad Binshtein, Ph.D.
> Cryo EM specialist - staff scientist
> Center for Structure Biology (CSB)
> Vanderbilt University
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> E-Mail: el...@gm...
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> Carlos Oscar Sánchez Sorzano                  e-mail:   co...@cn...
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