Re: [scipion-users] question about scipion.config

[Jose M. de la R. T. <del...@gm...>]

Dear Yashar,

Unfortunately, the 'Localized Reconstruction' integrated into Scipion is
only in the development branch, which
is planned to be released as a new version for beginning of next year. The
version installed via SBGrid is the
previous release v1.0.1. You will you need to install the development
branch for that, take a look at:
https://github.com/I2PC/scipion/wiki/How-to-Install and let us know if you
have any trouble.

Apart from that, the error you are having, probably is related to the
configuration file at the user level, at
~/.config/scipion/scipion.conf. Can you try to run scipion config and check
if fix that error?

Bests,
Jose Miguel


On Thu, Oct 27, 2016 at 3:34 PM, Yashar Sadian <sa...@em...> wrote:

> Hi
> I am trying to run the localized reconstruction protocol by Ilca et al,
> 2015 which uses scipion but I receive the following error:
> -bash-4.1$ scipion
> Error: No section: 'PACKAGES'
> Please check the configuration file
> /g/sbgrid/programs/x86_64-linux/scipion/1.0.1/config/scipion.conf and
> try again.
> -bash-4.1$ cd  /g/sbgrid/programs/x86_64-linux/scipion/1.0.1/config/
>
> could you please tell me what exactly I need to do to troubleshoot?
>
> --
> Best,
> Yashar Sadian
>
>
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