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Re: [scipion-users] Error in Scipion config
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From: Grigory S. <sha...@gm...> - 2016-10-17 08:47:10
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Hi, you have to modify all these variables so they would point to the correct path. Best regards, Grigory -------------------------------------------------------------------------------- Grigory Sharov, Ph.D. Institute of Genetics and Molecular and Cellular Biology Integrated Structural Biology Department (CBI) 1, rue Laurent Fries 67404 Illkirch, France tel. 03 69 48 51 00 e-mail: sh...@ig... On Mon, Oct 17, 2016 at 8:36 AM, Subhomoi Borkotoky <sub...@gm...> wrote: > Hi, > > While configuring the scipion on my desktop (Ubuntu 14.04, 64bit), I am > getting the following error. I am not sure what to change in the > "scipion.conf" file. I am attaching the screenshots and conf file. Please > suggest. > > " Path to MPI_LIBDIR (/usr/lib64/mpi/gcc/openmpi/lib) should exist but it > doesn't. > Path to MPI_INCLUDE (/usr/lib64/mpi/gcc/openmpi/include) should exist > but it doesn't. > Path to MPI_BINDIR (/usr/lib64/mpi/gcc/openmpi/bin) should exist but it > doesn't. > Path to JAVA_HOME (/usr/lib64/jvm/java-1.7.0-openjdk-1.7.0) should > exist but it doesn't. > Path to JAVA_BINDIR (/usr/lib64/jvm/java-1.7.0-openjdk-1.7.0/bin) > should exist but it doesn't. > Cannot find file: /usr/lib64/jvm/java-1.7.0-openjdk-1.7.0/bin/java > Cannot find file: /usr/lib64/jvm/java-1.7.0-openjdk-1.7.0/bin/javac > Cannot find file: /usr/lib64/jvm/java-1.7.0-openjdk-1.7.0/bin/jar > Cannot find file: /usr/lib64/mpi/gcc/openmpi/bin/mpicc > Cannot find file: /usr/lib64/mpi/gcc/openmpi/bin/mpiCC > Cannot find file: /usr/lib64/mpi/gcc/openmpi/bin/mpiCC > Cannot find file: /usr/lib64/mpi/gcc/openmpi/include/mpi.h" > > > > -- > Yours Sincerely, > -------------------------- > SUBHOMOI BORKOTOKY, > Centre for Bioinformatics > Pondicherry University > Pondicherry,INDIA. > > Alternate Email: sub...@ma... > > > > ------------------------------------------------------------ > ------------------ > Check out the vibrant tech community on one of the world's most > engaging tech sites, SlashDot.org! http://sdm.link/slashdot > _______________________________________________ > scipion-users mailing list > sci...@li... > https://lists.sourceforge.net/lists/listinfo/scipion-users > > |
