Re: [scipion-users] Metadata loading

[Сергей Н. <ser...@un...>]

Thank you Jose,

If you need any other data/files etc., just let me know.

Best,
Sergey

2016-09-29 10:21 GMT+02:00 Jose Miguel de la Rosa Trevin <
del...@gm...>:

> Thanks Sergey,
>
> I think that you should split that into different projects if it is really
> another project. If it is the same one, it make sense to add to the current
> one. But this would be a way to alleviate the current issue. We will let
> you know about any progress related this. Thanks a lot for sharing the
> project.sqlite database for further inspection.
>
> Cheers,
> Jose Miguel.
>
>
>
> On Thu, Sep 29, 2016 at 10:17 AM, Сергей Назаров <ser...@un...
> > wrote:
>
>> Dear Jose, Pablo,
>>
>> Here is the project file, I also attach settings file just in case.
>> Yes, the tree is really big, I simply add branches as soon is new data is
>> arriving. So, for future I would try to split the data into as many
>> projects as possible.
>>
>> Best,
>> Sergey
>>
>> 2016-09-28 11:23 GMT+02:00 Jose Miguel de la Rosa Trevin <
>> del...@gm...>:
>>
>>> Dear Serguey,
>>>
>>> As Pablo said, thanks for given us important feedback. Could you share
>>> you project.sqlite databaset with us? So we can perform some tests on it.
>>> It should work with this number of runs and this would be smother after we
>>> fix some refresh problems.
>>>
>>> Kind regards,
>>> Jose Miguel.
>>>
>>>
>>> On Wed, Sep 28, 2016 at 11:00 AM, Pablo <p.c...@gm...>
>>> wrote:
>>>
>>>> Wow! We certainly need to have your case in mind (589 runs) when
>>>> testing performance.
>>>> Collapsing some branches actually reduce "drawing time" but the whole
>>>> project is loaded which takes most of the time.
>>>>
>>>> Now I can't see any other workaround than deleting runs. If you want to
>>>> keep them all, another option could be to copy the project folder (watch
>>>> out for the disk space), and in the new project delete runs.
>>>> But I can understand this way you loose the whole picture of the
>>>> project.
>>>>
>>>> I've added your case into our issue, and will discuss your case in our
>>>> next development meeting.
>>>>
>>>> :-(
>>>>
>>>> Pablo.
>>>>
>>>>
>>>> On 27/09/16 16:26, Сергей Назаров wrote:
>>>>
>>>> Dear Pablo,
>>>>
>>>> Thank you for a quick reply. Unfortunately, I don't have many protocols
>>>> running at the same time, usually from 1 to 3. But the project is huge, the
>>>> number of folders in Runs/ is 589. I keep most of branches collapsed,
>>>> hopefully it prevent them from loading.
>>>>
>>>> Best,
>>>> Sergey
>>>>
>>>> 2016-09-26 19:00 GMT+02:00 Pablo <p.c...@gm...>:
>>>>
>>>>> Dear Sergey,
>>>>>
>>>>> Thanks a lot for your feedback, this is very important for us to know
>>>>> important issues and also to give priority to new features. We are aware of
>>>>> some performance issues related with the metadata loading, which sometimes
>>>>> blocks the GUI, as you are describing. Is this happening to  you when many
>>>>> protocols are in ‘running’ state? Or just when the project has many
>>>>> protocols? We are working to find a solution to this problem and make the
>>>>> processing with Scipion more effective, sorry for the inconveniences.
>>>>>
>>>>> All the best,
>>>>> Pablo
>>>>> Scipion team.
>>>>>
>>>>>
>>>>>
>>>>> On 26/09/16 15:52, Сергей Назаров wrote:
>>>>>
>>>>>> Dear Scipion Community,
>>>>>>
>>>>>> I constantly experience issue with loading metadata to my projects.
>>>>>> It can get really annoying, I wait sometimes almost a minute to be
>>>>>> able to adjust the description of a protocol, choose data (particles.
>>>>>> models etc.). I found this behavior both on local machines and on cluster
>>>>>> through ssh. While I can understand slow metadata loading through ssh,
>>>>>> especially for a big project with many protocols already executed, on local
>>>>>> machine this behavior appears after sometime after reboot. I don't know if
>>>>>> it starts after some threshold amount of protocols or not, but after
>>>>>> machine reboot everything runs nice and smooth for certain time and then
>>>>>> starts again.
>>>>>> I found one closed request on github concerning slow metadata, but
>>>>>> without any details.
>>>>>> Could you please advise me something about this issue? How to behave
>>>>>> when your project is on cluster and metadata is slow? I am not superuser,
>>>>>> so I am not able to reboot nodes everytime.
>>>>>>
>>>>>> Best,
>>>>>> Sergey Nazarov
>>>>>> Biozentrum Basel
>>>>>>
>>>>>
>>>>>
>>>>
>>>>
>>>> ------------------------------------------------------------
>>>> ------------------
>>>>
>>>> _______________________________________________
>>>> scipion-users mailing list
>>>> sci...@li...
>>>> https://lists.sourceforge.net/lists/listinfo/scipion-users
>>>>
>>>>
>>>
>>
>