Re: [scipion-users] [Xmipp-users] Error in xmipp particle picking

[Jose M. de la R. T. <del...@gm...>]

Dear Ashutosh,

As Grigory already pointed out, we are moving from newxmipp-users to the
more general scipion-users mailing list.
Sorry for the late response. Could you provide more details about the
problem? (as Grigory said, the Scipion version)
You have only imported the Micrographs and then Particle picking?

Bests,
Jose Miguel.


On Mon, Sep 12, 2016 at 3:47 PM, Grigory Sharov <sha...@gm...>
wrote:

> Hello Ashutosh,
>
> my guess is newxmipp-users list is kind of "dead", so it is better to
> write to *sci...@li...
> <sci...@li...>*
>
> What is scipion version you are using? I.e., which git branch you are on:
> master or v1.0, devel?
>
> Best regards,
> Grigory
>
> ------------------------------------------------------------
> --------------------
> Grigory Sharov, Ph.D.
> Institute of Genetics and Molecular and Cellular Biology
> Integrated Structural Biology Department (CBI)
> 1, rue Laurent Fries
> 67404 Illkirch, France
> tel. 03 69 48 51 00
> e-mail: sh...@ig...
>
> On Thu, Sep 8, 2016 at 6:08 AM, ashutosh srivastava <ash...@gm...>
> wrote:
>
>> Dear Scipion and xmipp users
>>
>> I am trying to pick particles from imported micrographs in Scipion GUI,
>> but keep getting this error
>> "No enum constant xmipp.viewer.particlepicker.training.model.Mode"
>> Following are some relevant details.
>> Micrographs imported from tif files and import finished without any
>> errors, I can see the micrographs with in scipion.
>> The xmipp3-manual-picking (step1) application dialogue box opens and I
>> can enter the micrograph location, however upon execution the above
>> mentioned error pops up. Following gets echoed on terminal
>>
>> *java.lang.IllegalArgumentException: No enum constant
>> xmipp.viewer.particlepicker.tr
>> <http://xmipp.viewer.particlepicker.tr>aining.model.Mode.*
>> * at xmipp.viewer.particlepicker.tr
>> <http://xmipp.viewer.particlepicker.tr>aining.model.SupervisedParticlePicker.loadConfig(SupervisedParticlePicker.java:638)*
>> * at xmipp.viewer.particlepicker.Pa
>> <http://xmipp.viewer.particlepicker.Pa>rticlePicker.<init>(ParticlePicker.java:149)*
>> * at xmipp.viewer.particlepicker.tr
>> <http://xmipp.viewer.particlepicker.tr>aining.model.SupervisedParticlePicker.<init>(SupervisedParticlePicker.java:79)*
>> * at xmipp.viewer.particlepicker.tr
>> <http://xmipp.viewer.particlepicker.tr>aining.model.SupervisedParticlePicker.<init>(SupervisedParticlePicker.java:72)*
>> * at xmipp.viewer.particlepicker.tr
>> <http://xmipp.viewer.particlepicker.tr>aining.model.SupervisedParticlePicker.<init>(SupervisedParticlePicker.java:125)*
>> * at xmipp.viewer.particlepicker.tr
>> <http://xmipp.viewer.particlepicker.tr>aining.SupervisedPickerRunner.run(SupervisedPickerRunner.java:33)*
>> * at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311)*
>> * at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:756)*
>> * at java.awt.EventQueue.access$500(EventQueue.java:97)*
>> * at java.awt.EventQueue$3.run(EventQueue.java:709)*
>> * at java.awt.EventQueue$3.run(EventQueue.java:703)*
>> * at java.security.AccessController.doPrivileged(Native Method)*
>> * at
>> java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:76)*
>> * at java.awt.EventQueue.dispatchEvent(EventQueue.java:726)*
>> * at
>> java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)*
>> * at
>> java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)*
>> * at
>> java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)*
>> * at
>> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)*
>> * at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)*
>> * at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)*
>>
>> In the terminal following warnings keep repeating
>>
>> *WARNING: MetaData: Error parsing column 'particleSize' value.*
>> *WARNING: MetaData: Error parsing column 'autopickPercent' value.*
>> *WARNING: MetaData: Error parsing column 'templatesNum' value.*
>> *WARNING: MetaData: Error parsing column 'pickingState' value.*
>> *WARNING: MetaData: Error parsing column 'manualParticlesNum' value.*
>> *WARNING: MetaData: Error parsing column 'autoParticlesNum' value.*
>> *WARNING!!! valueIn.failed = True, binding NULL*
>> *WARNING!!! valueIn.failed = True, binding NULL*
>> *WARNING!!! valueIn.failed = True, binding NULL*
>> *WARNING!!! valueIn.failed = True, binding NULL*
>> *WARNING!!! valueIn.failed = True, binding NULL*
>> *WARNING!!! valueIn.failed = True, binding NULL*
>>
>> Kindly let me know if any other details are required.
>>
>> Thank you
>>
>> Best Regards
>> Ashutosh
>>
>>
>> ------------------------------------------------------------
>> ------------------
>>
>> _______________________________________________
>> Newxmipp-users mailing list
>> New...@li...
>> https://lists.sourceforge.net/lists/listinfo/newxmipp-users
>>
>>
>
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