Re: [scipion-users] [Xmipp-users] Error in xmipp particle picking

[Grigory S. <sha...@gm...>]

Hello Ashutosh,

my guess is newxmipp-users list is kind of "dead", so it is better to write
to *sci...@li...
<sci...@li...>*

What is scipion version you are using? I.e., which git branch you are on:
master or v1.0, devel?

Best regards,
Grigory

--------------------------------------------------------------------------------
Grigory Sharov, Ph.D.
Institute of Genetics and Molecular and Cellular Biology
Integrated Structural Biology Department (CBI)
1, rue Laurent Fries
67404 Illkirch, France
tel. 03 69 48 51 00
e-mail: sh...@ig...

On Thu, Sep 8, 2016 at 6:08 AM, ashutosh srivastava <ash...@gm...>
wrote:

> Dear Scipion and xmipp users
>
> I am trying to pick particles from imported micrographs in Scipion GUI,
> but keep getting this error
> "No enum constant xmipp.viewer.particlepicker.training.model.Mode"
> Following are some relevant details.
> Micrographs imported from tif files and import finished without any
> errors, I can see the micrographs with in scipion.
> The xmipp3-manual-picking (step1) application dialogue box opens and I can
> enter the micrograph location, however upon execution the above mentioned
> error pops up. Following gets echoed on terminal
>
> *java.lang.IllegalArgumentException: No enum constant
> xmipp.viewer.particlepicker.training.model.Mode.*
> * at
> xmipp.viewer.particlepicker.training.model.SupervisedParticlePicker.loadConfig(SupervisedParticlePicker.java:638)*
> * at
> xmipp.viewer.particlepicker.ParticlePicker.<init>(ParticlePicker.java:149)*
> * at
> xmipp.viewer.particlepicker.training.model.SupervisedParticlePicker.<init>(SupervisedParticlePicker.java:79)*
> * at
> xmipp.viewer.particlepicker.training.model.SupervisedParticlePicker.<init>(SupervisedParticlePicker.java:72)*
> * at
> xmipp.viewer.particlepicker.training.model.SupervisedParticlePicker.<init>(SupervisedParticlePicker.java:125)*
> * at
> xmipp.viewer.particlepicker.training.SupervisedPickerRunner.run(SupervisedPickerRunner.java:33)*
> * at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311)*
> * at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:756)*
> * at java.awt.EventQueue.access$500(EventQueue.java:97)*
> * at java.awt.EventQueue$3.run(EventQueue.java:709)*
> * at java.awt.EventQueue$3.run(EventQueue.java:703)*
> * at java.security.AccessController.doPrivileged(Native Method)*
> * at
> java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:76)*
> * at java.awt.EventQueue.dispatchEvent(EventQueue.java:726)*
> * at
> java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)*
> * at
> java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)*
> * at
> java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)*
> * at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)*
> * at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)*
> * at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)*
>
> In the terminal following warnings keep repeating
>
> *WARNING: MetaData: Error parsing column 'particleSize' value.*
> *WARNING: MetaData: Error parsing column 'autopickPercent' value.*
> *WARNING: MetaData: Error parsing column 'templatesNum' value.*
> *WARNING: MetaData: Error parsing column 'pickingState' value.*
> *WARNING: MetaData: Error parsing column 'manualParticlesNum' value.*
> *WARNING: MetaData: Error parsing column 'autoParticlesNum' value.*
> *WARNING!!! valueIn.failed = True, binding NULL*
> *WARNING!!! valueIn.failed = True, binding NULL*
> *WARNING!!! valueIn.failed = True, binding NULL*
> *WARNING!!! valueIn.failed = True, binding NULL*
> *WARNING!!! valueIn.failed = True, binding NULL*
> *WARNING!!! valueIn.failed = True, binding NULL*
>
> Kindly let me know if any other details are required.
>
> Thank you
>
> Best Regards
> Ashutosh
>
>
> ------------------------------------------------------------
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