[scipion-users] Particle Images from ml2d

[List, J. <jon...@ph...>]

Hi

we are currently using scipion for generating class averages of DNA origami structures. We optained best result with the xmipp ml2d algorithm. Sadly we were not able to access the single particles for the classes in the aligned state  (it worked for other algorithms). The "aply gemometry" checkbox charged something but did not result in the correct alignmet like in the class average image. Also clicking on summary/ouput/classes insted of "analyse results" which sometimes did the trick for the old xmipp did not work. Do you know a way to generate this correctly aligned particle stack from ml2d runs?

Greetings and thanks

Jonathan List