Re: [scipion-users] importing movies

[Jose M. de la R. T. <del...@gm...>]

Indeed, the # has an special meaning, because it mark the ID of the item
(either Micrograph or Movie) that will be used
inside the set. The % character can do the work here.  In a general case I
think that should be combined with the
movies since the most common case is to have a dataset with more than one
movie.

I will let you know when you do any progress in this direction. I'm
thinking that it can a bit more complicated when using
this in an streaming mode. By the way, how do you usually collect movies,
in a single stack or in separate frames, or both?

Bests,
Jose Miguel.


On Mon, Jul 11, 2016 at 5:51 PM, Juha Huiskonen <juh...@gm...>
wrote:

> Dear Jose Miguel,
>
> May I suggest that wildcards "*" and "?" are reserved for general use and
> "#" for digits [0-9], and "%" for specifying the pattern for all the frames
> in one movie.
>
> So in my case
>
> movie_%%%%.mrc
>
> or
>
> mov*_%%%%.mrc
>
> would work. I hope that makes sense and would not be too complicated.
>
> Alternatively, a
>
> Best wishes,
> Juha
>
>
>
> --
> Juha T. Huiskonen, PhD
> Associate Professor
> Principal Investigator
>
> Oxford Particle Imaging Centre
> Division of Structural Biology
> Wellcome Trust Centre for Human Genetics
> University of Oxford
>
> http://www.strubi.ox.ac.uk/strubi/research/huiskonen/
> Email: ju...@st...
> Tel.: +44 1865 287 844
> Mob.: +44 7576 505 422
>
> On Mon, Jul 11, 2016 at 4:24 PM, Jose Miguel de la Rosa Trevin <
> del...@gm...> wrote:
>
>> Dear Juha,
>>
>> Right now it is only possible to import frames contained in a single
>> stack (mrcs or any other EM format).
>> I have started a modification to support frames in individual frames, but
>> it is in a development branch
>> and is not ready yet. Something that we still have not clear is how we
>> could allow to specify both the movie part
>> and the frame part in the pattern without complicating things too
>> much....so any suggestion about this is
>> welcome.
>>
>> We have pending to generate some documentation pages about the types and
>> options for each import case.
>>
>> Hope this helps,
>> Jose Miguel.
>>
>>
>> On Mon, Jul 11, 2016 at 4:37 PM, Juha Huiskonen <juh...@gm...
>> > wrote:
>>
>>> Hi all,
>>>
>>> I am trying to import one movie, that is stored as separate frames,
>>> called
>>>
>>> movie_0001.mrc
>>> movie_0002.mrc
>>> ...
>>> movie_0020.mrc
>>>
>>> For import, I tried using pattern movie_####.mrc which I was hoping
>>> would do exactly what I wanted. However, it seems I got out 20 single frame
>>> 'movies', instead of one 20-frame movie (SetOfMovies has 20 items).
>>>
>>> What am I doing wrong?
>>>
>>> Best wishes,
>>> Juha
>>>
>>>
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>
>
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