Re: [scipion-users] importing movies

[Juha H. <juh...@gm...>]

Dear Jose Miguel,

May I suggest that wildcards "*" and "?" are reserved for general use and
"#" for digits [0-9], and "%" for specifying the pattern for all the frames
in one movie.

So in my case

movie_%%%%.mrc

or

mov*_%%%%.mrc

would work. I hope that makes sense and would not be too complicated.

Alternatively, a

Best wishes,
Juha



--
Juha T. Huiskonen, PhD
Associate Professor
Principal Investigator

Oxford Particle Imaging Centre
Division of Structural Biology
Wellcome Trust Centre for Human Genetics
University of Oxford

http://www.strubi.ox.ac.uk/strubi/research/huiskonen/
Email: ju...@st...
Tel.: +44 1865 287 844
Mob.: +44 7576 505 422

On Mon, Jul 11, 2016 at 4:24 PM, Jose Miguel de la Rosa Trevin <
del...@gm...> wrote:

> Dear Juha,
>
> Right now it is only possible to import frames contained in a single stack
> (mrcs or any other EM format).
> I have started a modification to support frames in individual frames, but
> it is in a development branch
> and is not ready yet. Something that we still have not clear is how we
> could allow to specify both the movie part
> and the frame part in the pattern without complicating things too
> much....so any suggestion about this is
> welcome.
>
> We have pending to generate some documentation pages about the types and
> options for each import case.
>
> Hope this helps,
> Jose Miguel.
>
>
> On Mon, Jul 11, 2016 at 4:37 PM, Juha Huiskonen <juh...@gm...>
> wrote:
>
>> Hi all,
>>
>> I am trying to import one movie, that is stored as separate frames, called
>>
>> movie_0001.mrc
>> movie_0002.mrc
>> ...
>> movie_0020.mrc
>>
>> For import, I tried using pattern movie_####.mrc which I was hoping would
>> do exactly what I wanted. However, it seems I got out 20 single frame
>> 'movies', instead of one 20-frame movie (SetOfMovies has 20 items).
>>
>> What am I doing wrong?
>>
>> Best wishes,
>> Juha
>>
>>
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