Re: [scipion-users] Question Regarding Creating Phantom in Xmipp

[Pablo C. <pc...@cn...>]

Hi, Jagan...I'm probably not the right person to answer since I couldn't 
run the phanton_create last week!!

Wait I've tried today and now I can generate a volume


I might be missing something too but format in the wiki and in my local 
working file looks different:

wiki: http://xmipp.cnb.csic.es/twiki/bin/view/Xmipp/Create_phantom

My file has (this generate a cylinder in the center (circular base):

This:

65 65 65 0
cyl = 1 -30 0 0 5 10 30 0 0 0
cyl = 1 -10 0 0 5 10 30 0 0 90
cyl = 1 10 0 0 5 10 30 0 90 0
cyl = 1 30 0 0 5 10 30 90 0 0


  generates this (front view -z):




To me, what seems to be wrong th the last one, unless I'm not getting it 
right, which it's very likely.


Which version are you working with?

Sorry for not being resolutive!!

All the best, Pablo.

On 18/04/16 11:20, Jagan Mohan wrote:
> Dear All,
>
> I have been trying to use xmipp_phantom_create to create a cylinder 
> using the following description file contents -
>
>
> # XMIPP_STAR_1 *
> # Phantom description file, (generated with phantom help)
> data_block1
>  _dimensions3D  '232 232 232'
>  _phantomBGDensity  0
>  _scale  1
> data_block2
> loop_
>  _featureType
>  _featureOperation
>  _featureDensity
>  _featureCenter
>  _featureSpecificVector
> cyl     +       1       '0 0 0' '40 40 232 0 90 0'
>
>
> However, when I change the last line to
>
> cyl     +       1       '0 0 0' '40 40 232 0 90 90'
>
> I get the same volume in both cases meaning that the last rotation 
> around Z is not being applied. Am I missing something here? Is it 
> something to do with the center of rotation?
>
>
> Regards,
> Jagan
>
>
>
>
> -- 
> -{[O]}-
>
>
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