Re: [scipion-users] Eman2.12 error: no such file or directory

[Grigory S. <sha...@gm...>]

Hi Pablo,

I have not tried EMAN2 with mpi in Scipion yet, but my guess is that
scratchdir does not exist..

Best regards,
Grigory

--------------------------------------------------------------------------------
Grigory Sharov, Ph.D.
Institute of Genetics and Molecular and Cellular Biology
Integrated Structural Biology Department (CBI)
1, rue Laurent Fries
67404 Illkirch, France
tel. 03 69 48 51 00
e-mail: sh...@ig...

On Thu, Mar 17, 2016 at 2:44 PM, Pablo <p.c...@gm...> wrote:

> Hi! Does anyone know why this might be happening? (Running eman initial
> volume.)
>
> Must say this is a special setup (not the standard Scipion one) but from
> source code, using web-develop branch (but that protocol runs fine in my
> machine, same source code)
>
> Is it some setup problem?
>
>
> Exception in thread Thread-1:
> 00048: Traceback (most recent call last):
> 00049: File
> ".../scipion/software/em/eman2.12/Python/lib/python2.7/threading.py", line
> 551, in __bootstrap_inner
> 00050: self.run()
> 00051: File
> ".../scipion/software/em/eman2.12/Python/lib/python2.7/threading.py", line
> 504, in run
> 00052: self.__target(*self.__args, **self.__kwargs)
> 00053: File ".../scipion/software/em/eman2.12/lib/EMAN2PAR.py", line 577,
> in run
> 00054:
> proc=subprocess.Popen(["e2parallel.py","localclient","--taskin=%s/%07d"%(self.scratchdir,self.nextid),"--taskout=%s/%07d.out"%(self.scratchdir,self.nextid)])
>
> 00055: File
> ".../scipion/software/em/eman2.12/Python/lib/python2.7/subprocess.py", line
> 679, in __init__
> 00056: errread, errwrite)
> 00057: File
> ".../scipion/software/em/eman2.12/Python/lib/python2.7/subprocess.py", line
> 1249, in execute child
> 00058: raise child_exception
> 00059: OSError: [Errno 2] No such file or directory
>
> (Have replaced actual path in the log with "...", but those paths exists.).
>
>
> All the best, Pablo.
>
>
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