Re: [scipion-users] Error while Installing Scipion - LAPACK

[Jagan M. <o....@gm...>]

Yeah I hope so too. I am also trying to figure it out.
This is exactly what I added to get Lapack installed -

set(CMAKE_C_FLAGS "-O3 -DADD_")

in file CMakeLists.txt

On Sat, Feb 13, 2016 at 7:56 PM, Jose Miguel de la Rosa Trevin <
del...@gm...> wrote:

> Thanks Jagan...let's see if Jesus have any clue with the other problem.
>
> On Sat, Feb 13, 2016 at 7:52 PM, Jagan Mohan <o....@gm...> wrote:
>
>> Dear Jose,
>> I had to set the CFLAGS in CMakeLists.txt file and then run the make and
>> make install. That solved the problem.
>>
>>
>> Regards,
>> Jagan
>>
>> On Sat, Feb 13, 2016 at 7:35 PM, Jose Miguel de la Rosa Trevin <
>> del...@gm...> wrote:
>>
>>> Dear Jagan,
>>>
>>> Can you tell me what you did to get lapack to compile? About the numpy
>>> problem, I haven't seen this issue before. I'm adding Jesus Cuenca (our
>>> system manager) to get some help from him.
>>>
>>> Best
>>> Jose Miguel.
>>>
>>> On Sat, Feb 13, 2016 at 3:38 PM, Jagan Mohan <o....@gm...> wrote:
>>>
>>>> Dear Jose,
>>>> I managed to get past the lapack error. However, I am now stuck at
>>>> numpy. Following is the error I get -
>>>>
>>>> compile options: '-Inumpy/core/src/private -Inumpy/core/src
>>>> -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray
>>>> -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/include
>>>> -I/gpfs/home/obbineni_j/em_soft/scipion/software/include/python2.7 -c'
>>>> gcc: _configtest.c
>>>> /gpfs/home/sys/opt/gcc/gcc-4.7.2/bin/../libexec/gcc/x86_64-unknown-linux-gnu/4.7.2/cc1:
>>>> error while loading shared libraries: libcloog-isl.so.4: cannot open shared
>>>> object file: No such file or directory
>>>> /gpfs/home/sys/opt/gcc/gcc-4.7.2/bin/../libexec/gcc/x86_64-unknown-linux-gnu/4.7.2/cc1:
>>>> error while loading shared libraries: libcloog-isl.so.4: cannot open shared
>>>> object file: No such file or directory
>>>> failure.
>>>>
>>>>
>>>> I have checked my LD_LIBRARY_PATH variable and libcloog-isl.so.4 is in
>>>> it. Do you know why I am getting this error?
>>>>
>>>>
>>>> Thanks and Regards,
>>>> Jagan
>>>>
>>>> On Fri, Feb 12, 2016 at 6:11 PM, Jagan Mohan <o....@gm...> wrote:
>>>>
>>>>> Dear Jose,
>>>>> Thank you for the reply. I will post to the Scipion mailing list in
>>>>> future. I tried the suggestion in the post but still get the same error.
>>>>> Maybe I am doing something wrong.
>>>>> I tried to copy the make.inc.example file to make.inc and added
>>>>> "-DADD_" to the CFLAGS. Is it right?
>>>>>
>>>>>
>>>>> Regards,
>>>>> Jagan
>>>>>
>>>>> On Fri, Feb 12, 2016 at 5:12 PM, Jose Miguel de la Rosa Trevin <
>>>>> del...@gm...> wrote:
>>>>>
>>>>>> Dear Jagan,
>>>>>>
>>>>>> Please use the scipion-users list (in CC), we will move also Xmipp
>>>>>> related question to this one.
>>>>>>
>>>>>> About the problem of installing lapack, I searched in google and
>>>>>> found something that can helps:
>>>>>>
>>>>>> http://icl.cs.utk.edu/lapack-forum/viewtopic.php?f=2&t=4564
>>>>>>
>>>>>> You can launch the same *cmake* command directly from the lapack
>>>>>> build directory and then continue with the normal scipion installation.
>>>>>>
>>>>>> Hope this helps
>>>>>> Jose Miguel.
>>>>>>
>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> -{[O]}-
>>>>>
>>>>
>>>>
>>>>
>>>> --
>>>> -{[O]}-
>>>>
>>>
>>>
>>
>>
>> --
>> -{[O]}-
>>
>
>


-- 
-{[O]}-