Re: [scipion-users] Error while Installing Scipion - LAPACK

[Jose M. de la R. T. <del...@gm...>]

Thanks Jagan...let's see if Jesus have any clue with the other problem.

On Sat, Feb 13, 2016 at 7:52 PM, Jagan Mohan <o....@gm...> wrote:

> Dear Jose,
> I had to set the CFLAGS in CMakeLists.txt file and then run the make and
> make install. That solved the problem.
>
>
> Regards,
> Jagan
>
> On Sat, Feb 13, 2016 at 7:35 PM, Jose Miguel de la Rosa Trevin <
> del...@gm...> wrote:
>
>> Dear Jagan,
>>
>> Can you tell me what you did to get lapack to compile? About the numpy
>> problem, I haven't seen this issue before. I'm adding Jesus Cuenca (our
>> system manager) to get some help from him.
>>
>> Best
>> Jose Miguel.
>>
>> On Sat, Feb 13, 2016 at 3:38 PM, Jagan Mohan <o....@gm...> wrote:
>>
>>> Dear Jose,
>>> I managed to get past the lapack error. However, I am now stuck at
>>> numpy. Following is the error I get -
>>>
>>> compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core
>>> -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath
>>> -Inumpy/core/src/npysort -Inumpy/core/include
>>> -I/gpfs/home/obbineni_j/em_soft/scipion/software/include/python2.7 -c'
>>> gcc: _configtest.c
>>> /gpfs/home/sys/opt/gcc/gcc-4.7.2/bin/../libexec/gcc/x86_64-unknown-linux-gnu/4.7.2/cc1:
>>> error while loading shared libraries: libcloog-isl.so.4: cannot open shared
>>> object file: No such file or directory
>>> /gpfs/home/sys/opt/gcc/gcc-4.7.2/bin/../libexec/gcc/x86_64-unknown-linux-gnu/4.7.2/cc1:
>>> error while loading shared libraries: libcloog-isl.so.4: cannot open shared
>>> object file: No such file or directory
>>> failure.
>>>
>>>
>>> I have checked my LD_LIBRARY_PATH variable and libcloog-isl.so.4 is in
>>> it. Do you know why I am getting this error?
>>>
>>>
>>> Thanks and Regards,
>>> Jagan
>>>
>>> On Fri, Feb 12, 2016 at 6:11 PM, Jagan Mohan <o....@gm...> wrote:
>>>
>>>> Dear Jose,
>>>> Thank you for the reply. I will post to the Scipion mailing list in
>>>> future. I tried the suggestion in the post but still get the same error.
>>>> Maybe I am doing something wrong.
>>>> I tried to copy the make.inc.example file to make.inc and added
>>>> "-DADD_" to the CFLAGS. Is it right?
>>>>
>>>>
>>>> Regards,
>>>> Jagan
>>>>
>>>> On Fri, Feb 12, 2016 at 5:12 PM, Jose Miguel de la Rosa Trevin <
>>>> del...@gm...> wrote:
>>>>
>>>>> Dear Jagan,
>>>>>
>>>>> Please use the scipion-users list (in CC), we will move also Xmipp
>>>>> related question to this one.
>>>>>
>>>>> About the problem of installing lapack, I searched in google and found
>>>>> something that can helps:
>>>>>
>>>>> http://icl.cs.utk.edu/lapack-forum/viewtopic.php?f=2&t=4564
>>>>>
>>>>> You can launch the same *cmake* command directly from the lapack
>>>>> build directory and then continue with the normal scipion installation.
>>>>>
>>>>> Hope this helps
>>>>> Jose Miguel.
>>>>>
>>>>
>>>>
>>>>
>>>> --
>>>> -{[O]}-
>>>>
>>>
>>>
>>>
>>> --
>>> -{[O]}-
>>>
>>
>>
>
>
> --
> -{[O]}-
>