Re: [scipion-users] Error while Installing Scipion - LAPACK

[Jagan M. <o....@gm...>]

Dear Jose,
I had to set the CFLAGS in CMakeLists.txt file and then run the make and
make install. That solved the problem.


Regards,
Jagan

On Sat, Feb 13, 2016 at 7:35 PM, Jose Miguel de la Rosa Trevin <
del...@gm...> wrote:

> Dear Jagan,
>
> Can you tell me what you did to get lapack to compile? About the numpy
> problem, I haven't seen this issue before. I'm adding Jesus Cuenca (our
> system manager) to get some help from him.
>
> Best
> Jose Miguel.
>
> On Sat, Feb 13, 2016 at 3:38 PM, Jagan Mohan <o....@gm...> wrote:
>
>> Dear Jose,
>> I managed to get past the lapack error. However, I am now stuck at numpy.
>> Following is the error I get -
>>
>> compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core
>> -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath
>> -Inumpy/core/src/npysort -Inumpy/core/include
>> -I/gpfs/home/obbineni_j/em_soft/scipion/software/include/python2.7 -c'
>> gcc: _configtest.c
>> /gpfs/home/sys/opt/gcc/gcc-4.7.2/bin/../libexec/gcc/x86_64-unknown-linux-gnu/4.7.2/cc1:
>> error while loading shared libraries: libcloog-isl.so.4: cannot open shared
>> object file: No such file or directory
>> /gpfs/home/sys/opt/gcc/gcc-4.7.2/bin/../libexec/gcc/x86_64-unknown-linux-gnu/4.7.2/cc1:
>> error while loading shared libraries: libcloog-isl.so.4: cannot open shared
>> object file: No such file or directory
>> failure.
>>
>>
>> I have checked my LD_LIBRARY_PATH variable and libcloog-isl.so.4 is in
>> it. Do you know why I am getting this error?
>>
>>
>> Thanks and Regards,
>> Jagan
>>
>> On Fri, Feb 12, 2016 at 6:11 PM, Jagan Mohan <o....@gm...> wrote:
>>
>>> Dear Jose,
>>> Thank you for the reply. I will post to the Scipion mailing list in
>>> future. I tried the suggestion in the post but still get the same error.
>>> Maybe I am doing something wrong.
>>> I tried to copy the make.inc.example file to make.inc and added "-DADD_"
>>> to the CFLAGS. Is it right?
>>>
>>>
>>> Regards,
>>> Jagan
>>>
>>> On Fri, Feb 12, 2016 at 5:12 PM, Jose Miguel de la Rosa Trevin <
>>> del...@gm...> wrote:
>>>
>>>> Dear Jagan,
>>>>
>>>> Please use the scipion-users list (in CC), we will move also Xmipp
>>>> related question to this one.
>>>>
>>>> About the problem of installing lapack, I searched in google and found
>>>> something that can helps:
>>>>
>>>> http://icl.cs.utk.edu/lapack-forum/viewtopic.php?f=2&t=4564
>>>>
>>>> You can launch the same *cmake* command directly from the lapack build
>>>> directory and then continue with the normal scipion installation.
>>>>
>>>> Hope this helps
>>>> Jose Miguel.
>>>>
>>>
>>>
>>>
>>> --
>>> -{[O]}-
>>>
>>
>>
>>
>> --
>> -{[O]}-
>>
>
>


-- 
-{[O]}-