Re: [scipion-users] Error while Installing Scipion - LAPACK

[Jose M. de la R. T. <del...@gm...>]

Dear Jagan,

Can you tell me what you did to get lapack to compile? About the numpy
problem, I haven't seen this issue before. I'm adding Jesus Cuenca (our
system manager) to get some help from him.

Best
Jose Miguel.

On Sat, Feb 13, 2016 at 3:38 PM, Jagan Mohan <o....@gm...> wrote:

> Dear Jose,
> I managed to get past the lapack error. However, I am now stuck at numpy.
> Following is the error I get -
>
> compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core
> -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath
> -Inumpy/core/src/npysort -Inumpy/core/include
> -I/gpfs/home/obbineni_j/em_soft/scipion/software/include/python2.7 -c'
> gcc: _configtest.c
> /gpfs/home/sys/opt/gcc/gcc-4.7.2/bin/../libexec/gcc/x86_64-unknown-linux-gnu/4.7.2/cc1:
> error while loading shared libraries: libcloog-isl.so.4: cannot open shared
> object file: No such file or directory
> /gpfs/home/sys/opt/gcc/gcc-4.7.2/bin/../libexec/gcc/x86_64-unknown-linux-gnu/4.7.2/cc1:
> error while loading shared libraries: libcloog-isl.so.4: cannot open shared
> object file: No such file or directory
> failure.
>
>
> I have checked my LD_LIBRARY_PATH variable and libcloog-isl.so.4 is in it.
> Do you know why I am getting this error?
>
>
> Thanks and Regards,
> Jagan
>
> On Fri, Feb 12, 2016 at 6:11 PM, Jagan Mohan <o....@gm...> wrote:
>
>> Dear Jose,
>> Thank you for the reply. I will post to the Scipion mailing list in
>> future. I tried the suggestion in the post but still get the same error.
>> Maybe I am doing something wrong.
>> I tried to copy the make.inc.example file to make.inc and added "-DADD_"
>> to the CFLAGS. Is it right?
>>
>>
>> Regards,
>> Jagan
>>
>> On Fri, Feb 12, 2016 at 5:12 PM, Jose Miguel de la Rosa Trevin <
>> del...@gm...> wrote:
>>
>>> Dear Jagan,
>>>
>>> Please use the scipion-users list (in CC), we will move also Xmipp
>>> related question to this one.
>>>
>>> About the problem of installing lapack, I searched in google and found
>>> something that can helps:
>>>
>>> http://icl.cs.utk.edu/lapack-forum/viewtopic.php?f=2&t=4564
>>>
>>> You can launch the same *cmake* command directly from the lapack build
>>> directory and then continue with the normal scipion installation.
>>>
>>> Hope this helps
>>> Jose Miguel.
>>>
>>
>>
>>
>> --
>> -{[O]}-
>>
>
>
>
> --
> -{[O]}-
>