Re: [Scaffoldhunter-devel] GSoC 2014- Visualization of Clustering Results, Ramachandran Plots and Heatmaps

[<nl...@us...>]

Hello Werner,

thanks for your interest in Scaffold Hunter. For this project idea you may 
also want to go through the packages edu.udo.scaffoldhunter.model.clustering 
and edu.udo.scaffoldhunter.view.dendrogram to see how hierarchical clustering 
and the dendrogram view are implemented. The literature linked at the project 
ideas page provides an example how heatmaps and clustering can be combined for 
an application in cheminformatics.

Since you are interested in visualization, the project idea "Molecule Clouds" 
might also be interesting for you. We already have obtained code from the 
authors who developed the approach, but it generated static images only. So 
using parts of the code and developing and interactive view for the approach 
also is quite a nice visualization project. You may use Google and search for 
(interactive) word/tag cloud to get an idea how an interactive visualization 
could look like.


Regards,
  Nils
 

On Wednesday 05 March 2014 13:18:35 Werner Sturm wrote:
> Hello,
> 
> My name is Werner Sturm and I study Computer Science (master's degree)
> at Technical University of Graz in Austria. My fields of interest are
> information visualization, computer graphics and software technology. I
> am mostly experienced in object oriented programming languages like Java
> and C++. I also have experience in JavaScript + HTML, C# and bash
> scripting. I've already done many internships as a Java software
> developer for a company over several years. Thus, I have experienced
> several frameworks/libraries like Hibernate, Swing, Apache Axis, etc.
> Moreover, I worked on a web-based scientific visualization (2D and 3D)
> of energy consumption for automotive engineering [1].
> 
> Now, I would like to tackle a new project about visualization to expand
> my experience in this field. The project idea "Visualization of
> Clustering Results, Ramachandran Plots and Heatmaps" caught my interest
> and so I would appreciate further information about this idea. My next
> step is going through the mentioned package
> "edu.udo.scaffoldhunter.view.treemap" in a more detailed way.
> 
> If you need more information about myself, don't hesitate to ask.
> 
> Best regards,
> Werner Sturm
> 
> [1]
> http://www.thinkmind.org/index.php?view=article&articleid=content_2013_1_10_
> 60019
> 
> 
> ----------------------------------------------------------------------------
> -- Subversion Kills Productivity. Get off Subversion & Make the Move to
> Perforce. With Perforce, you get hassle-free workflows. Merge that actually
> works. Faster operations. Version large binaries.  Built-in WAN
> optimization and the freedom to use Git, Perforce or both. Make the move to
> Perforce.
> http://pubads.g.doubleclick.net/gampad/clk?id=122218951&iu=/4140/ostg.clktrk
> _______________________________________________
> Scaffoldhunter-devel mailing list
> Sca...@li...
> https://lists.sourceforge.net/lists/listinfo/scaffoldhunter-devel