Re: [Scaffoldhunter-devel] GSoC 2014 participation and Command Line Support project

[Check N. <che...@gm...>]

Sorry for the late reply nils,

I was writing exams, now i'm done ^_^. would take a look at the
tutorials and get and get an svn checkout and start writing up my GSoC
proposal for some early review and see what I could start working on
at the moment.

Regards,
Nyah

On 3/3/14, nl...@us... <nl...@us...> wrote:
> Hi Nyah,
>
> thanks for your interest. A good starting point is to look at the tutorial
> [1]
> to make yourself familiar with the software and the analysis methods
> supported
> by Scaffold Hunter. You can check out the source code from the SVN
> repository
> (trunk). The packages edu.udo.scaffoldhunter.model.clustering and
> edu.udo.scaffoldhunter.model.treegen are most important for the project idea
>
> since they contain the code for clustering and the scaffold tree generation,
>
> which should be supported by a CLI. We have recently added a very basic
> command line tool for a specific task that can be found in the package
> edu.udo.scaffoldhunter.cli. It uses the library JCommander [2] for argument
>
> parsing. Of course, you are free to use a different library. However, you
> may
> want to have a look at the code to get an idea how command line support for
>
> Scaffold Hunter can be implemented.
>
>
> Regards,
>   Nils
>
> [1] http://scaffoldhunter.sourceforge.net/tutorials.html
> [2] http://jcommander.org/
>
>
> On Thursday 27 February 2014 13:46:16 Check Nyah wrote:
>> Hi,
>> I am Nyah Check, a sophomore computer engineering student at the
>> University of Buea(Cameroon), a 3 year Biochemistry student at my
>> University where I did some deep study of nucleotides and cheminformatics
>> which is this project's application domain and a GSoC participant for
>> 2013
>> where I worked with BRL-CAD on implementing a pull routine to reverse
>> the effects
>> of a push on Geometry. I wish to implement the command line interface for
>> this great software and would love to get some guidance on where to look
>> in
>> the software, online tutorials I could look at in addition to the
>> Scaffold
>> preprint document which would assist me in implementing this project and
>> alsothe priority of this project in relation to the organization's vision
>> for this year's GSoC. I see this project as both an intellectual
>> challenge
>> and a forum to exercise my Java and also interact with the cutting edge
>> researchers
>> in this domain. Can't wait to work with you guys this year :-). Thanks
>> for
>> the assistance.
>>
>> Cheers!
>> Nyah
>