[Scaffoldhunter-users] query

[Prateek G. <pra...@gm...>]

hi,
sorry for the inconvinience for my last post not on the mailing list.
By my last post I was trying to convey that which I have understood and to
seek your opinion.
I used the version 1.7 because it was pointed out in a previous mail.I will
install the 2.x version soon.
I have read the CT-index research paper and what i have learnt uptil now.
By the subset reason I was trying to convey about the degree of fingerprint
matching of the features of the query pattern with the features of the
database graph pattern.Those that were positive in the test were used for
the isomorphism procedure and discarding the rest.
This is the string matching algorithm that is being used in the formal
definition of certificate matching?

So I aim to know what exactly does the fragment z value that is currently
limited to 0-6 accounts for in the filter rules  .Is it the number of
features to be taken into account while filtering or the number of atoms
that must be possessed in the drug compound , of the query atom that filter
mechanism is  considering or is it related to the fingerprinting bit array?

Also does this project idea aims to integrate the JChemPaint as the new
editor over the current structure editor being used.

Regards,
Prateek