Re: [Scaffoldhunter-users] GSOC13 Structure-Activity relationship

[<nl...@us...>]

Hi Srikanth,

Karsten's pointers are definitely a good starting point.

On Sunday 21 April 2013 14:26:19 srikanth bezawada wrote:
> I would like to get pointed
> towards more resources other than literature,any extra explanations needed
> regarding this project so that I can start working.Also,please do point me
> towards the documentation for the source code 2.2.0 .

A Javadoc documentation can be generated using the ant build file contained in 
the repository. You can check out trunk and build it by the command "ant 
javadoc".
There are two packages of special interest for the project idea "Structure-
Activity relationship": edu.udo.scaffoldhunter.model.treegen contains code 
implementing the cheminformatics technique, i.e., generating scaffolds by 
pruning side chains. This functionality is currently used in a preprocessing 
step. However, for the project idea it is more appropriate to generate the 
scaffolds when they are required for the SAR view and to keep track of the 
side chains pruned. There is no need to support very large data sets (with 
thousands of scaffolds) for the SAR table view.
To implement a new view the package edu.udo.scaffoldhunter.view is important, 
it contains the interfaces that have to be implemented.


Regards
Nils