I downloaded SBW and updated Mono and XQuartz. When I click on the applications (Simulation Tool, Structural Analysis... ) they do not launch. I am running OS X 10.10.5 as my opperating system.
I used the latest verison of Mono at first. I downloaded and installed the 2.10.5 verison of mono that you gave me a link to and I still have the same problem.
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I am experiencing the same problem. I uninstalled MDK 4.2.3.4 and then MRE 2.10.5, but none of the programs are launching although the icons pop an bounce on the dock. I also am running 10.10.5.
Also, I should note that the problem is specific to certain applications. JarnacLite and Jacobian Visualization do not open, but SMBL Translator and SBW Auto Layout appear to open.
Regards,
Kevin
Last edit: Kevin Janes 2016-05-28
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I'm afraid I don't have a mac right now to try it myself. Back when we released that version of SBW I only ported a couple of the application to use a different user interface, (Access to the biomodels database, sbml translator, auto layout, layout viewer). The other applications require X11. Maybe you could run an X11 terminal and then change into the
/Applications/SBW/bin
directory. This directory contains all the launch scripts for the individual applications.
there you could run ./sbw_init.sh followed by other scripts. You could get more debugging information by prefixing the commands with MONO_LOG_LEVEL for example:
MONO_LOG_LEVEL=debug ./sbw_simtool.sh
maybe you could run that and attach the output. Again sorry that I can't do it myself.
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Sorry, I am a bit confused. I have managed to launch one of the appilications but some have failed to launch. There are the steps that I have tried so far:
Lauch the XQuartz appilication and the xterminal
go to the bin folder cd /Applications/SBW/bin
./sbw_simtool.sh
and then for each appilication ./app name
So I could lanuch ./sbw_models2 but nothing else such as ./sbw_simtool
Could you let me know what Mono version you have installed? I'm afraid the only version that would make the user interface show up would be version:
http://download.mono-project.com/archive/2.10.5/download/
after that the mono team removed the X11 rendering backend that made the WinForms API work reasonably well.
cheers
Frank
I used the latest verison of Mono at first. I downloaded and installed the 2.10.5 verison of mono that you gave me a link to and I still have the same problem.
I am experiencing the same problem. I uninstalled MDK 4.2.3.4 and then MRE 2.10.5, but none of the programs are launching although the icons pop an bounce on the dock. I also am running 10.10.5.
Also, I should note that the problem is specific to certain applications. JarnacLite and Jacobian Visualization do not open, but SMBL Translator and SBW Auto Layout appear to open.
Regards,
Kevin
Last edit: Kevin Janes 2016-05-28
I'm afraid I don't have a mac right now to try it myself. Back when we released that version of SBW I only ported a couple of the application to use a different user interface, (Access to the biomodels database, sbml translator, auto layout, layout viewer). The other applications require X11. Maybe you could run an X11 terminal and then change into the
/Applications/SBW/bin
directory. This directory contains all the launch scripts for the individual applications.
there you could run ./sbw_init.sh followed by other scripts. You could get more debugging information by prefixing the commands with MONO_LOG_LEVEL for example:
MONO_LOG_LEVEL=debug ./sbw_simtool.sh
maybe you could run that and attach the output. Again sorry that I can't do it myself.
Running it through XQuartz seemed to fix the problem. Thanks!
Kevin
Sorry, I am a bit confused. I have managed to launch one of the appilications but some have failed to launch. There are the steps that I have tried so far:
So I could lanuch ./sbw_models2 but nothing else such as ./sbw_simtool
running MONO_LOG_LEVEL=debug ./sbw_simtool I got this debug information
http://pastebin.com/J67C1pqz
Last edit: NG 2016-06-01