sbmlsolver-discuss

[SOSlib-discuss] Difficulty compiling

[Phillip T. <pt...@gm...>]

Hello,

while attempting to compile the sbml ode solver library on our machines, the
following error crops up:

Jim, Phil,

This is the error message I'm getting when building SBML ODE on Falcon. I
rebuilt everything with the GNU compilers just to be sure we were on the
same footing with everything:

checking for SBML Library Version... expr: syntax error
expr: syntax error
expr: syntax error
./configure: line 4175: test: -eq: unary operator expected
configure: found SBML Library Version
checking correct functioning of SBML... no:
                  CFLAGS=-g -O2 -I/app/moes/platform/opteron.hp/include
-I/app/moes/platform/opteron.hp/include/sbml
                  LDFLAGS= -Wl,-rpath,/app/moes/platform/opteron.hp/lib
-L/app/moes/platform/opteron.hp/lib
                  LIBS= -lxerces-c -lsbml
configure: error: Can not link to SBML Library:
                 Please, make sure to use libSBML version >= 2.3.2

I've already sent the config.log. I'm pretty certain it's a configure file
issue, but I haven't been able to track it down just yet.


Has anyone encountered anything similar? Is this perhaps user error (our
tech guy is working on it for me)?

Re: [SOSlib-discuss] Difficulty compiling

[Akira F. <fu...@bi...>]

Hi,

At Mon, 16 Apr 2007 09:15:52 -0400,
"Phillip Tabor" <pt...@gm...> wrote:
> This is the error message I'm getting when building SBML ODE on Falcon. I
> rebuilt everything with the GNU compilers just to be sure we were on the same
> footing with everything:
> 
> checking for SBML Library Version... expr: syntax error
> expr: syntax error
> expr: syntax error

This error occurs when the "expr" command is bit old than expected.
Please try to install new version of "expr".

> ./configure: line 4175: test: -eq: unary operator expected

This also happens depending on your "test" command. Usually, the
"test" command is a built-in command of your shell (sh, bash, zsh,
etc.)  This error will be solved by installing newer version of sh,
bash, etc.

Hope this helps,
-- 
Akira Funahashi, Ph.D.| Assistant Professor, Dept. of Biosciences
[fu...@bi...] | and Informatics, Keio Univ.