Re: [SOSlib-discuss] [Fwd: Re: Difficulty compiling]

[Rainer M. <ra...@tb...>]

Hi Phillip,

sorry, actually the sbml.m4 file wasn't the right thing to exchange,
it's not used, if you already have a configure file.

I have just tested the new configure file, and it doesn't work.

In the current development version, we do not have these tests anymore!
So you could try the development version.

a) either check out this version via anonymous CVS from sourceforge, as
described here: http://sourceforge.net/cvs/?group_id=139893
b) download todays snapshot of the 1.7.0-beta version from
http://www.tbi.univie.ac.at/~raim/odeSolver/download/SBML_odeSolver-1.7.0.tar.gz

Please let us know, if this works for you. If not, we can still
hand-edit the configure file of the 1.6.0 version for you (remove the
tests that don't work).

BTW, what is Falcon? Have never heard of this.

Rainer

Phillip Tabor wrote:
> The sbml.m4 file was a no-go. To further complicate matters, it will be 
> impossible to update expr or bash on these systems. Is there something 
> else we can do?
> 
> On 4/17/07, *Rainer Machne* <ra...@tb... 
> <mailto:ra...@tb...>> wrote:
> 
> 
>     Hi Phillip,
> 
>     I remembered that we also had this configure bug once. Christoph
>     suggested:
> 
>     "yes, this is a configure bug which is fixed in the cvs version of
>     SOSlib. a quick fix would be to just replace the config/sbml.m4 file
>     with the one from the cvs repository.
> 
>     =;) xtof"
> 
>     I have attached the new sbml.m4 file (but haven't tested it with the old
>     release). Maybe you can backup your file and try this one. Just run
>     ./configure again with the attached file in folder config/
> 
>     Please, let us know, if that (or updating expr and test) helped.
> 
>     Thanks,
>     Rainer
> 
> 
>     Phillip Tabor wrote:
>      > Hello,
>      >
>      > while attempting to compile the sbml ode solver library on our
>     machines,
>      > the following error crops up:
>      >
>      > Jim, Phil,
>      >
>      > This is the error message I'm getting when building SBML ODE on
>     Falcon.
>      > I rebuilt everything with the GNU compilers just to be sure we
>     were on
>      > the same footing with everything:
>      >
>      > checking for SBML Library Version... expr: syntax error
>      > expr: syntax error
>      > expr: syntax error
>      > ./configure: line 4175: test: -eq: unary operator expected
>      > configure: found SBML Library Version
>      > checking correct functioning of SBML... no:
>      >                   CFLAGS=-g -O2
>     -I/app/moes/platform/opteron.hp/include
>      > -I/app/moes/platform/opteron.hp/include/sbml
>      >                   LDFLAGS=
>     -Wl,-rpath,/app/moes/platform/opteron.hp/lib
>      > -L/app/moes/platform/opteron.hp/lib
>      >                   LIBS= -lxerces-c -lsbml
>      > configure: error: Can not link to SBML Library:
>      >                  Please, make sure to use libSBML version >= 2.3.2
>      >
>      > I've already sent the config.log. I'm pretty certain it's a configure
>      > file issue, but I haven't been able to track it down just yet.
>      >
>      >
>      > Has anyone encountered anything similar? Is this perhaps user
>     error (our
>      > tech guy is working on it for me)?
>      >
>      >
>      >
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