[SOSlib-discuss] Regarding inputting of kinetic rate constants

[Phillip T. <pt...@gm...>]

Hello,

I am attempting to use the odeSolver commandline tool and I'd like to know
if there is a way to input the initial rate constants as an array. In other
words, does the program have to parse the .xml file at every iteration, or
is there a way to override this and simply pass it an array of numbers to be
assigned as rates to the odes?

I am attempting to use the software to fit kinetic rate constants with an
evolutionary algorithm. This requires many executions of the program, and
having to parse the .xml file on each run will add a considerable amount of
overhead to the execution time.