Re: [SOSlib-discuss] Installing problems: expat/xerces

[Rainer M. <ra...@tb...>]

Hi Adri,

this is quite an embarassing bug. We once thought of it, and wanted to=20
include libSBML/expat in the configure process, but then seem to have=20
forgotten about it. Sorry!

Maybe you can try to replace each occurence of

`-lxerces-c'

in the files

configure
examples/Makefile.am
examples/Makefile.in
odeSolver/Makefile.am
odeSolver/Makefile.in

with `-lexpat'

e.g. by usind sed:

 	sed 's/xerces-c/expat/g' configure > configure.new
 	mv configure.new configure

Do this for all above files.

This might work, as our configure never directly searches for or requires=
=20
expat/xerces-c.


Please let me know, if that worked for you. Sorry for the trouble and=20
thanks for reporting! We will fix this for the next release (in 2-3=20
months).

Rainer


On Fri, 27 Jan 2006, LOPEZ GARCIA DE LOMANA, ADRIAN wrote:

> Hi all,
>
> I'm trying to install odeSolver on my Red Hat 9.0 machine and I have so=
me problems at the configuration step. I have installed libSBML (with exp=
at, not xerces!!!) and Sundials with no apparent errors. While I execute =
./configure I get this:
>
>
> [root@nerium SBML_odeSolver-1.6.0]# ./configure
> checking for a BSD-compatible install... /usr/bin/install -c
> checking whether build environment is sane... yes
> checking for gawk... gawk
> checking whether make sets $(MAKE)... yes
> checking build system type... i686-pc-linux-gnu
> checking host system type... i686-pc-linux-gnu
> checking for g++... g++
> checking for C++ compiler default output file name... a.out
> checking whether the C++ compiler works... yes
> checking whether we are cross compiling... no
> checking for suffix of executables...
> checking for suffix of object files... o
> checking whether we are using the GNU C++ compiler... yes
> checking whether g++ accepts -g... yes
> checking for style of include used by make... GNU
> checking dependency style of g++... gcc3
> checking for gcc... gcc
> checking whether we are using the GNU C compiler... yes
> checking whether gcc accepts -g... yes
> checking for gcc option to accept ANSI C... none needed
> checking dependency style of gcc... gcc3
> checking how to run the C preprocessor... gcc -E
> checking for ranlib... ranlib
> checking for a BSD-compatible install... /usr/bin/install -c
> checking whether make sets $(MAKE)... (cached) yes
> checking for autoconf... /usr/bin/autoconf
> checking for aclocal... /usr/local/bin/aclocal
> checking for make... /usr/bin/make
> checking for ar... /usr/bin/ar
> checking for swig... /usr/bin/swig
> checking for perl... /usr/bin/perl
> checking for SBML Library headers... yes
> checking for SBML Library... yes
> configure: found SBML Library Version 2.3.4
> checking correct functioning of SBML... no:
>                   CFLAGS=3D-g -O2 -I/usr/local/include -I/usr/local/inc=
lude/sbml
>                   LDFLAGS=3D -Wl,-rpath,/usr/local/lib -L/usr/local/lib
>                   LIBS=3D -lxerces-c -lsbml
> configure: error: Can not link to SBML Library:
>                  Please, make sure to use libSBML version >=3D 2.3.2
>
> Seems to be trying to call libSBML with LIBS=3D-lxerces-c which I do no=
t have. I've tried
>
> ./configure LIBS=3D-lexpat
>
> instead, but the error was very similar:
> checking correct functioning of SBML... no:
>                   CFLAGS=3D-g -O2 -I/usr/local/include -I/usr/local/inc=
lude/sbml
>                   LDFLAGS=3D -Wl,-rpath,/usr/local/lib -L/usr/local/lib
>                   LIBS=3D-lexpat -lxerces-c -lsbml
> configure: error: Can not link to SBML Library:
>                  Please, make sure to use libSBML version >=3D 2.3.2
>
> Is it mandatory to have libSBML installed with xerces or there is a way=
 to keep on using expat?
>
> Thanks for your time,
>
>
>
>
> Adri=E1n.
>
>
>
> -------------------------------------------------------
> This SF.net email is sponsored by: Splunk Inc. Do you grep through log =
files
> for problems?  Stop!  Download the new AJAX search engine that makes
> searching your log files as easy as surfing the  web.  DOWNLOAD SPLUNK!
> http://sel.as-us.falkag.net/sel?cmd____________________________________=
___________
> sbmlsolver-discuss mailing list
> sbm...@li...
> https://lists.sourceforge.net/lists/listinfo/sbmlsolver-discuss
>