Re: [SOSlib-discuss] compiled model simulation now segfaults[Scanned]

[Rainer M. <ra...@tb...>]

Eric Fernandez wrote:
> Rainer,
> 
> I am as puzzled as you actually! I cannot get the error anymore, but I
> uninstalled the older libraries and reinstalled, might explain the
> issue.

Yeah, that works for me too.

It is the old story: the command-line compiler includes the globally 
installed sosLib header files, so it requires a `make install', so that 
really the current header files are included, and not older ones.

Maybe we can introduce some option "useLocalHeaders" for compilation, so 
the compiler command includes the local header files and lib for testing.

Rainer



> 
> Cheers,
> Eric 
> 
>> -----Original Message-----
>> From: Rainer Machne [mailto:ra...@tb...] 
>> Sent: 08 October 2008 11:59
>> To: Eric Fernandez
>> Cc: sbm...@li...
>> Subject: Re: [SOSlib-discuss] compiled model simulation now 
>> segfaults[Scanned]
>>
>> Hi Eric,
>>
>> I get the same error for the current CVS state, sorry for that!
>> So far I couldn't find out what it is. It seems that the 
>> compiled rhs. 
>> functions don't recognize cvodeData.
>>
>> However, my current state here doesn't have this problem!
>> I will commit to CVS later today or tomorrow (including all 
>> the new topological sorting stuff), and I am ... pretty 
>> confident ... that everything should work as before.
>>
>> Rainer
>>
>>
>> Eric Fernandez wrote:
>>> Hi,
>>>
>>> Some change made to SOSlib now leads odeSolver to segfaults when 
>>> trying to simulate a model with compilation, at least on my system 
>>> (AIX). Do you see that under Linux ? I don't know if it 
>> also segfaults 
>>> with other projects uding SOSlib, I only tested odeSolver/odeSolver.
>>>
>>> I double checked with an older CVS which behaves properly. Updated 
>>> files since this one are:
>>> U examples/ASTgetIndexTest.c
>>> P examples/Makefile.am
>>> P examples/Sense.c
>>> P examples/adj_sensitivity.c
>>> P examples/adjsenstest.c
>>> P examples/adjsenstest_ContDiscData.c
>>> P examples/batch_integrate.c
>>> P examples/integrate.c
>>> P examples/sensitivity.c
>>> P examples/senstest.c
>>> P examples/simpleIntegratorInstance.c
>>> cvs update: Updating odeSolver
>>> P odeSolver/printModel.c
>>> cvs update: Updating sbml
>>> cvs update: Updating scripts
>>> cvs update: Updating src
>>> P src/arithmeticCompiler.c
>>> P src/cvodeData.c
>>> P src/cvodeSolver.c
>>> P src/integratorInstance.c
>>> P src/modelSimplify.c
>>> P src/odeConstruct.c
>>> P src/odeModel.c
>>> P src/processAST.c
>>> P src/sensSolver.c
>>> P src/solverError.c
>>> cvs update: Updating src/sbmlsolver
>>> P src/sbmlsolver/cvodeData.h
>>> P src/sbmlsolver/odeModel.h
>>> P src/sbmlsolver/processAST.h
>>> P src/sbmlsolver/solverError.h
>>>
>>> I have not identified the problem yet.
>>>
>>> Regards,
>>> Eric
>>>
>>>
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