Re: [SOSlib-discuss] compiled model simulation now segfaults[Scanned]

[Eric F. <efe...@ph...>]

Rainer,

That explains the issue then. Good to know!

Thanks a lot,
Eric 

> -----Original Message-----
> From: Rainer Machne [mailto:ra...@tb...] 
> Sent: 08 October 2008 12:04
> To: Eric Fernandez
> Cc: sbm...@li...
> Subject: Re: [SOSlib-discuss] compiled model simulation now 
> segfaults[Scanned]
> 
> Eric Fernandez wrote:
> > Rainer,
> > 
> > I am as puzzled as you actually! I cannot get the error 
> anymore, but I 
> > uninstalled the older libraries and reinstalled, might explain the 
> > issue.
> 
> Yeah, that works for me too.
> 
> It is the old story: the command-line compiler includes the 
> globally installed sosLib header files, so it requires a 
> `make install', so that really the current header files are 
> included, and not older ones.
> 
> Maybe we can introduce some option "useLocalHeaders" for 
> compilation, so the compiler command includes the local 
> header files and lib for testing.
> 
> Rainer
> 
> 
> 
> > 
> > Cheers,
> > Eric
> > 
> >> -----Original Message-----
> >> From: Rainer Machne [mailto:ra...@tb...]
> >> Sent: 08 October 2008 11:59
> >> To: Eric Fernandez
> >> Cc: sbm...@li...
> >> Subject: Re: [SOSlib-discuss] compiled model simulation now 
> >> segfaults[Scanned]
> >>
> >> Hi Eric,
> >>
> >> I get the same error for the current CVS state, sorry for that!
> >> So far I couldn't find out what it is. It seems that the compiled 
> >> rhs.
> >> functions don't recognize cvodeData.
> >>
> >> However, my current state here doesn't have this problem!
> >> I will commit to CVS later today or tomorrow (including 
> all the new 
> >> topological sorting stuff), and I am ... pretty confident ... that 
> >> everything should work as before.
> >>
> >> Rainer
> >>
> >>
> >> Eric Fernandez wrote:
> >>> Hi,
> >>>
> >>> Some change made to SOSlib now leads odeSolver to segfaults when 
> >>> trying to simulate a model with compilation, at least on 
> my system 
> >>> (AIX). Do you see that under Linux ? I don't know if it
> >> also segfaults
> >>> with other projects uding SOSlib, I only tested 
> odeSolver/odeSolver.
> >>>
> >>> I double checked with an older CVS which behaves 
> properly. Updated 
> >>> files since this one are:
> >>> U examples/ASTgetIndexTest.c
> >>> P examples/Makefile.am
> >>> P examples/Sense.c
> >>> P examples/adj_sensitivity.c
> >>> P examples/adjsenstest.c
> >>> P examples/adjsenstest_ContDiscData.c
> >>> P examples/batch_integrate.c
> >>> P examples/integrate.c
> >>> P examples/sensitivity.c
> >>> P examples/senstest.c
> >>> P examples/simpleIntegratorInstance.c
> >>> cvs update: Updating odeSolver
> >>> P odeSolver/printModel.c
> >>> cvs update: Updating sbml
> >>> cvs update: Updating scripts
> >>> cvs update: Updating src
> >>> P src/arithmeticCompiler.c
> >>> P src/cvodeData.c
> >>> P src/cvodeSolver.c
> >>> P src/integratorInstance.c
> >>> P src/modelSimplify.c
> >>> P src/odeConstruct.c
> >>> P src/odeModel.c
> >>> P src/processAST.c
> >>> P src/sensSolver.c
> >>> P src/solverError.c
> >>> cvs update: Updating src/sbmlsolver
> >>> P src/sbmlsolver/cvodeData.h
> >>> P src/sbmlsolver/odeModel.h
> >>> P src/sbmlsolver/processAST.h
> >>> P src/sbmlsolver/solverError.h
> >>>
> >>> I have not identified the problem yet.
> >>>
> >>> Regards,
> >>> Eric
> >>>
> >>>
> >> 
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> 
>