Re: [SOSlib-discuss] compiled model simulation now segfaults[Scanned]

[Eric F. <efe...@ph...>]

Rainer,

I am as puzzled as you actually! I cannot get the error anymore, but I
uninstalled the older libraries and reinstalled, might explain the
issue.

Cheers,
Eric 

> -----Original Message-----
> From: Rainer Machne [mailto:ra...@tb...] 
> Sent: 08 October 2008 11:59
> To: Eric Fernandez
> Cc: sbm...@li...
> Subject: Re: [SOSlib-discuss] compiled model simulation now 
> segfaults[Scanned]
> 
> Hi Eric,
> 
> I get the same error for the current CVS state, sorry for that!
> So far I couldn't find out what it is. It seems that the 
> compiled rhs. 
> functions don't recognize cvodeData.
> 
> However, my current state here doesn't have this problem!
> I will commit to CVS later today or tomorrow (including all 
> the new topological sorting stuff), and I am ... pretty 
> confident ... that everything should work as before.
> 
> Rainer
> 
> 
> Eric Fernandez wrote:
> > Hi,
> > 
> > Some change made to SOSlib now leads odeSolver to segfaults when 
> > trying to simulate a model with compilation, at least on my system 
> > (AIX). Do you see that under Linux ? I don't know if it 
> also segfaults 
> > with other projects uding SOSlib, I only tested odeSolver/odeSolver.
> > 
> > I double checked with an older CVS which behaves properly. Updated 
> > files since this one are:
> > U examples/ASTgetIndexTest.c
> > P examples/Makefile.am
> > P examples/Sense.c
> > P examples/adj_sensitivity.c
> > P examples/adjsenstest.c
> > P examples/adjsenstest_ContDiscData.c
> > P examples/batch_integrate.c
> > P examples/integrate.c
> > P examples/sensitivity.c
> > P examples/senstest.c
> > P examples/simpleIntegratorInstance.c
> > cvs update: Updating odeSolver
> > P odeSolver/printModel.c
> > cvs update: Updating sbml
> > cvs update: Updating scripts
> > cvs update: Updating src
> > P src/arithmeticCompiler.c
> > P src/cvodeData.c
> > P src/cvodeSolver.c
> > P src/integratorInstance.c
> > P src/modelSimplify.c
> > P src/odeConstruct.c
> > P src/odeModel.c
> > P src/processAST.c
> > P src/sensSolver.c
> > P src/solverError.c
> > cvs update: Updating src/sbmlsolver
> > P src/sbmlsolver/cvodeData.h
> > P src/sbmlsolver/odeModel.h
> > P src/sbmlsolver/processAST.h
> > P src/sbmlsolver/solverError.h
> > 
> > I have not identified the problem yet.
> > 
> > Regards,
> > Eric
> > 
> > 
> ----------------------------------------------------------------------
> > --- This SF.Net email is sponsored by the Moblin Your Move 
> Developer's 
> > challenge Build the coolest Linux based applications with 
> Moblin SDK & 
> > win great prizes Grand prize is a trip for two to an Open 
> Source event 
> > anywhere in the world 
> > http://moblin-contest.org/redirect.php?banner_id=100&url=/
> > _______________________________________________
> > sbmlsolver-discuss mailing list
> > sbm...@li...
> > https://lists.sourceforge.net/lists/listinfo/sbmlsolver-discuss
> 
>