Re: [SOSlib-discuss] [sbml-interoperability] libSBML 3.1.1 and SOSLib CVS version

[Chang, C. <Chr...@nr...>]

Rainer,

   Thanks for the info. We'll see what we can do until the next release.

Best wishes,

Chris 

> -----Original Message-----
> From: Rainer Machne [mailto:ra...@tb...] 
> Sent: Wednesday, July 09, 2008 6:37 AM
> To: Chang, Christopher
> Cc: SBML Software Interoperability Discussion List; 
> sbm...@li...
> Subject: Re: [sbml-interoperability] libSBML 3.1.1 and SOSLib 
> CVS version
> 
> Hi Chris,
> 
> Chris wrote:
> > Sorry for the indirect post, I realize this is more of an 
> SOSLib issue, but I thought I'd ask here in case anyone 
> knows. We're posting to the SOSLib site separately...
> > 
> > We have a model consistent with SBML level 2, version 3, 
> rev 2, and libSBML 3.1.1 installed. We use SOSLib for 
> translation of our SBML model to C code; however, the last 
> release of SOSLib depends on an older SBML library and 
> language that is inconsistent with our model. The CVS version 
> of SOSLib should work with libSBML 3.
> > 
> 
> 
> FYI, SOSlib  internally also generates C-code (with option -c 
> SUNDIALS-specific
> functions are generated and compiled using GCC, instead of 
> using libSBML 
> AST evaluation),
> and the current CVS version can actually translate libSBML 
> ASTs directly 
> to machine code
> (windows and linux, 32bit and 64bit architectures).
> 
> > Questions:
> > - Are there other tools people use for SBML-to-C translation?
> > - Has anyone managed to build the CVS version of SOSLib 
> successfully? The autoconf/automake input and configure.txt 
> seem to be broken.
> 
> Sorry, the configure.txt was outdated. I have updated it for 
> now, but in 
> general when using the CVS version, you should generate your own 
> configure by using ./autogen.sh.
> 
> 
> > - Will there be a future release of SOSLib? CVS commitments 
> seems to be sporadic, so perhaps soon?
> 
> Yes, but unfortunately we are all snowed under work on other 
> projects. 
> We hope to release this summer though.
> 
> Rainer
> 
> > 
> > Anyway, thanks for any advice,
> > 
> > Chris
> > --
> > Christopher H. Chang, Ph.D.
> > Scientist II
> > National Renewable Energy Laboratory
> > 1617 Cole Blvd., MS 1608
> > Golden, CO  80401
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