[SOSlib-devel] [ sbmlsolver-Bugs-1979339 ] sink reactions not supported?

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Bugs item #1979339, was opened at 2008-05-30 16:05
Message generated for change (Comment added) made by raimc
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Category: None
Group: None
>Status: Closed
Resolution: None
Priority: 5
Private: No
Submitted By: Michael Lawrence (larman)
Assigned to: Nobody/Anonymous (nobody)
Summary: sink reactions not supported?

Initial Comment:
When a reaction only has reactants, most SBML simulators treat them as a sink, i.e. they decrease the concentrations of the reactants, even though there are no products.

It seems SOSLib does not do this. It would be nice if it did :)

See HG in BIOMD0000000015 for an example.

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>Comment By: Rainer Machne (raimc)
Date: 2008-05-30 21:16

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was not a bug, but a misinterpretation of inorganic phosphate Pi for the
constant pi during preprocessing of the SBML file.

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